SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001018078
Gene Symbol: FPGS
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.127804679G>A COSM3904304 TCGA-CD-A4MG-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4650-5p agctatGGCCTGAag UCAGGCCU m7a Disrupted HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127
hsa-miR-370-5p agctaTGACCTGaag CAGGUCAC m7a Created HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127
hsa-miR-1972 agctaTGGCCTGAag UCAGGCCA m8a Disrupted HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127
hsa-miR-15a-3p agctATGGCCTGaag CAGGCCAU m8a Disrupted HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127

Mutation Mutation ID Sample Name Cancer Type
chr9:g.127804670G>A COSM3395585 8036140 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-208a-5p atcctccAAAGCTat GAGCUUUU m6b Created HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127
hsa-miR-208b-5p atcctccAAAGCTat AAGCUUUU m6b Created HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127
hsa-miR-4443 atCCTCCAAagctat UUGGAGGC m7a (m6a->m7a) HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127
hsa-miR-6515-5p atCCTCCAAagctat UUGGAGGG m7a (m6a->m7a) HHHNA_22351_FPGS|NM_001018078|exon_CDS|-2.7905321374138|-0.860070722720127

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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