SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001018067
Gene Symbol: SERBP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.67430295T>C COSM4009666 TCGA-CG-4306-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4645-5p tcaTGCCTGGgcact ACCAGGCA m7b Disrupted HHRBL_466_BCBL1-2of3-SCL_8737
hsa-miR-4673 tcaTGCCTGGgcact UCCAGGCA m7b Disrupted HHRBL_466_BCBL1-2of3-SCL_8737
hsa-miR-6840-3p tcatgCCTGGGCact GCCCAGGA m7a Disrupted HHRBL_466_BCBL1-2of3-SCL_8737
hsa-miR-6862-5p tCATGCCCGggcact CGGGCAUG m8a (m7a->m8a) HHRBL_466_BCBL1-2of3-SCL_8737
Mutation Mutation ID Sample Name Cancer Type
chr1:g.67430271C>A COSM4914994 TCGA-UB-A7MC-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.67413248C>G COSM1503370 TCGA-55-1592-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15a-5p ttcTGCTGCTgatgt UAGCAGCA m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-15b-5p ttcTGCTGCTgatgt UAGCAGCA m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-16-5p ttcTGCTGCTgatgt UAGCAGCA m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-195-5p ttcTGCTGCTgatgt UAGCAGCA m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-214-3p ttctgCTGCTGatgt ACAGCAGG m6b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-3617-3p ttctgcTGCTGATGt CAUCAGCA m8a Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-424-5p ttcTGCTGCTGatgt CAGCAGCA m8a Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-4291 ttctgCTGCTGAtgt UUCAGCAG m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-4433a-3p ttctgCTCCTGatgt ACAGGAGU m6b Disrupted HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-4459 ttctgCTCCTGatgt CCAGGAGG m6b Disrupted HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-4468 tTCTGCTCctgatgt AGAGCAGA m7b Disrupted HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-4768-3p ttctgCTCCTGatgt CCAGGAGA m6b Disrupted HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-497-5p ttcTGCTGCTGatgt CAGCAGCA m8a Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-6081 ttCTGCTCCTgatgt AGGAGCAG m8a Disrupted HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-6838-5p ttcTGCTGCTgatgt AAGCAGCA m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-922 tTCTGCTGCtgatgt GCAGCAGA m8a (m7a->m8a) HHRBL_462_BCBL1-2of3-SCL_1419

Mutation Mutation ID Sample Name Cancer Type
chr1:g.67413214T>C COSM3492042 TCGA-EE-A29E-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1203 ccaGCTCCGGcttaa CCCGGAGC m7b Created HHRBL_462_BCBL1-2of3-SCL_1419
hsa-miR-4487 CCAGCTCTggcttaa AGAGCUGG m8a Disrupted HHRBL_462_BCBL1-2of3-SCL_1419

Mutation Mutation ID Sample Name Cancer Type
chr1:g.67412779T>A COSN10052130 C0065T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548aa atacTGGTTTTaata AAAAACCA m7b Disrupted HHRBL_460_BCBL1-2of3-SCL_11967
hsa-miR-548ap-3p atacTGGTTTTaata AAAAACCA m7b Disrupted HHRBL_460_BCBL1-2of3-SCL_11967
hsa-miR-548as-3p atactGGTTTTAata UAAAACCC m7a Disrupted HHRBL_460_BCBL1-2of3-SCL_11967
hsa-miR-548at-3p atactGGTTTTaata CAAAACCG m6b Disrupted HHRBL_460_BCBL1-2of3-SCL_11967
hsa-miR-548ay-3p atactGGTTTTaata CAAAACCG m6b Disrupted HHRBL_460_BCBL1-2of3-SCL_11967
hsa-miR-548t-3p atacTGGTTTTaata AAAAACCA m7b Disrupted HHRBL_460_BCBL1-2of3-SCL_11967
hsa-miR-605-5p atactGGATTTAata UAAAUCCC m7a Created HHRBL_460_BCBL1-2of3-SCL_11967

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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