SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001018067
Gene Symbol: SERBP1

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr1:g.67430271C>A COSM4914994 TCGA-UB-A7MC-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.67430262C>G COSM3492045 TCGA-FS-A1ZP-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-197-3p gcGTGGTGAccaacc UUCACCAC m7b (m6b->m7b) HHHNE_16356_SERBP1|NM_001018067|exon_CDS|-6.50969113052688|0.317519064297625
hsa-miR-5587-5p gcgtgGTGACCAacc AUGGUCAC m7b Created HHHNE_16356_SERBP1|NM_001018067|exon_CDS|-6.50969113052688|0.317519064297625

Mutation Mutation ID Sample Name Cancer Type
chr1:g.67430187A>G COSM1344070 TCGA-CA-6718-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4778-3p acAAGAAGAaagaag UCUUCUUC m7a (m6a->m7a) HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201
hsa-miR-6875-3p acaaGAAGAAagaag AUUCUUCC m6b Created HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201
hsa-miR-578 ACAAGAAGaaagaag CUUCUUGU m8a Created HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201
hsa-miR-4659b-3p acaAGAAGAAAgaag UUUCUUCU m8a Created HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201
hsa-miR-4659a-3p acaAGAAGAAAgaag UUUCUUCU m8a Created HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201

Mutation Mutation ID Sample Name Cancer Type
chr1:g.67430172G>A COSM1320929 TCGA-29-1699-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4632-3p ccggcggGGGCGGCg UGCCGCCC m7b Disrupted HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201
hsa-miR-1281 ccggcGGAGGCGgcg UCGCCUCC m7b Created HHHNE_16355_SERBP1|NM_001018067|exon_CDS|-7.92352377544066|-0.561636828188201

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser