SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001017415
Gene Symbol: USP1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.62450504G>T COSM426552 TCGA-BH-A0C0-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6758-3p aaccattGAATGAGg ACUCAUUC m7b Disrupted HHHNE_20451_USP1|NM_001017415|exon_CDS|-7.18528831798391|1.85768850058952
hsa-miR-224-3p aACCATTTaatgagg AAAAUGGU m7b Created HHHNE_20451_USP1|NM_001017415|exon_CDS|-7.18528831798391|1.85768850058952
hsa-miR-4272 aaccaTTGAATGagg CAUUCAAC m7a Disrupted HHHNE_20451_USP1|NM_001017415|exon_CDS|-7.18528831798391|1.85768850058952
hsa-miR-4694-3p aaCCATTTaatgagg CAAAUGGA m6b Created HHHNE_20451_USP1|NM_001017415|exon_CDS|-7.18528831798391|1.85768850058952
Mutation Mutation ID Sample Name Cancer Type
chr1:g.62450363G>A COSM2238301 TCGA-BR-8081-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr1:g.62450348C>G COSM76963 TCGA-13-0723-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4421 acGACAGGTatggat ACCUGUCU m7a (m6a->m7a) HHHNE_20450_USP1|NM_001017415|exon_CDS|-6.63253030850381|-0.68421413122551
hsa-miR-626 acGACAGCTatggat AGCUGUCU m7a (m7a->m6a) HHHNE_20450_USP1|NM_001017415|exon_CDS|-6.63253030850381|-0.68421413122551
hsa-miR-6876-3p acGACAGCTatggat AGCUGUCU m7a (m7a->m6a) HHHNE_20450_USP1|NM_001017415|exon_CDS|-6.63253030850381|-0.68421413122551

Mutation Mutation ID Sample Name Cancer Type
chr1:g.62450346A>G COSM1343786 TCGA-AY-6196-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-626 taacGACAGCTatgg AGCUGUCU m7a Disrupted HHHNE_20450_USP1|NM_001017415|exon_CDS|-6.63253030850381|-0.68421413122551
hsa-miR-6876-3p taacGACAGCTatgg AGCUGUCU m7a Disrupted HHHNE_20450_USP1|NM_001017415|exon_CDS|-6.63253030850381|-0.68421413122551
hsa-miR-103b taacgacGGCTATGg UCAUAGCC m7b Created HHHNE_20450_USP1|NM_001017415|exon_CDS|-6.63253030850381|-0.68421413122551

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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