SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

Transcript ID:	NM_001017415
Gene Symbol:	USP1

Somatic mutations that impact miRNA target sites

Mutation		Mutation ID	Sample Name	Cancer Type
chr1:g.62450436A>T		COSM1503496	TCGA-55-6985-01	[lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-548g-3p	ccttaACAGTTTaga	AAAACUGU	m7b	Disrupted	HHHNA_1126_USP1|NM_001017415|exon_CDS|-6.94251998222326|0.248765908956728
hsa-miR-548av-3p	ccttaaCAGTTTaga	AAAACUGC	m6b	Disrupted	HHHNA_1126_USP1|NM_001017415|exon_CDS|-6.94251998222326|0.248765908956728

Mutation		Mutation ID	Sample Name	Cancer Type
chr1:g.62450363G>A		COSM2238301	TCGA-BR-8081-01	[stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr1:g.62450348C>G		COSM76963	TCGA-13-0723-01	[ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-4421	acGACAGGTatggat	ACCUGUCU	m7a	(m6a->m7a)	HHHNA_1124_USP1|NM_001017415|exon_CDS|-6.60631840587154|0.386107358199331
hsa-miR-626	acGACAGCTatggat	AGCUGUCU	m7a	(m7a->m6a)	HHHNA_1124_USP1|NM_001017415|exon_CDS|-6.60631840587154|0.386107358199331
hsa-miR-6876-3p	acGACAGCTatggat	AGCUGUCU	m7a	(m7a->m6a)	HHHNA_1124_USP1|NM_001017415|exon_CDS|-6.60631840587154|0.386107358199331

Mutation		Mutation ID	Sample Name	Cancer Type
chr1:g.62450346A>G		COSM1343786	TCGA-AY-6196-01	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-626	taacGACAGCTatgg	AGCUGUCU	m7a	Disrupted	HHHNA_1124_USP1|NM_001017415|exon_CDS|-6.60631840587154|0.386107358199331
hsa-miR-6876-3p	taacGACAGCTatgg	AGCUGUCU	m7a	Disrupted	HHHNA_1124_USP1|NM_001017415|exon_CDS|-6.60631840587154|0.386107358199331
hsa-miR-103b	taacgacGGCTATGg	UCAUAGCC	m7b	Created	HHHNA_1124_USP1|NM_001017415|exon_CDS|-6.60631840587154|0.386107358199331

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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