SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001014839
Gene Symbol: NCDN

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.35565280C>T COSM3488939 TCGA-ER-A194-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6876-5p cctCTTCCTatcaca CAGGAAGG m6b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-6077 cCTCTTCCtatcaca GGGAAGAG m7b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-5197-3p cCTCTTCTTatcaca AAGAAGAG m8a (m7a->m8a) HPCB1_357_G462.1_36030889
hsa-miR-4476 cctCTTCCTatcaca CAGGAAGG m6b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-3653-3p cctCTTCTTAtcaca CUAAGAAG m7b Created HPCB1_357_G462.1_36030889
hsa-miR-3161 cctcttCTTATCAca CUGAUAAG m7b Created HPCB1_357_G462.1_36030889
hsa-miR-6876-5p cctCTTCCTatcaca CAGGAAGG m6b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-6077 cCTCTTCCtatcaca GGGAAGAG m7b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-5197-3p cCTCTTCTTatcaca AAGAAGAG m8a (m7a->m8a) HPCB1_357_G462.1_36030889
hsa-miR-3653-3p cctCTTCTTAtcaca CUAAGAAG m7b Created HPCB1_357_G462.1_36030889
hsa-miR-3161 cctcttCTTATCAca CUGAUAAG m7b Created HPCB1_357_G462.1_36030889
hsa-miR-4476 cctCTTCCTatcaca CAGGAAGG m6b Disrupted HPCB1_357_G462.1_36030889

Mutation Mutation ID Sample Name Cancer Type
chr1:g.35565273C>T COSM1258800 ESO-1608 [oesophagus][lower_third][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5197-5p cTGCCATTctcttcc CAAUGGCA m7b Created HPCB1_357_G462.1_36030889
hsa-miR-5197-5p cTGCCATTctcttcc CAAUGGCA m7b Created HPCB1_357_G462.1_36030889
hsa-miR-3605-5p ctgcCATCCTCttcc UGAGGAUG m7b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-3123 ctgccATTCTCTtcc CAGAGAAU m7b Created HPCB1_357_G462.1_36030889
hsa-miR-2392 ctgCCATCCTcttcc UAGGAUGG m7b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-2392 ctgCCATCCTcttcc UAGGAUGG m7b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-3605-5p ctgcCATCCTCttcc UGAGGAUG m7b Disrupted HPCB1_357_G462.1_36030889
hsa-miR-3123 ctgccATTCTCTtcc CAGAGAAU m7b Created HPCB1_357_G462.1_36030889

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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