SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001014831
Gene Symbol: PAK4
Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr19:g.39173907C>T COSM1494278 TCGA-A3-3363-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4641 ggctcCATGGGCAtc UGCCCAUG m8a Created HPTA1_5742_G8103.1_39664556

Mutation Mutation ID Sample Name Cancer Type
chr19:g.39173906AC>A COSM4614184 LOVO [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7976 gggctcCAGGGCAtc UGCCCUGA m7a Created HPTA1_5742_G8103.1_39664556
hsa-miR-874-3p gggctcCAGGGCAtc CUGCCCUG m7b Created HPTA1_5742_G8103.1_39664556
hsa-miR-6799-3p gggctcCAGGGCAtc UGCCCUGC m7a Created HPTA1_5742_G8103.1_39664556
hsa-miR-146b-3p gggctcCAGGGCAtc UGCCCUGU m7a Created HPTA1_5742_G8103.1_39664556
hsa-miR-3157-3p gggctccAGGGCAtc CUGCCCUA m6b Created HPTA1_5742_G8103.1_39664556
hsa-miR-3173-5p gggctcCAGGGCAtc UGCCCUGC m7a Created HPTA1_5742_G8103.1_39664556
hsa-miR-4254 gggCTCCAGGgcatc GCCUGGAG m7b Created HPTA1_5742_G8103.1_39664556
hsa-miR-4308 gggcTCCAGGGcatc UCCCUGGA m7b Created HPTA1_5742_G8103.1_39664556

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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