SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001013694
Gene Symbol: SRRD

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr22:g.26491534T>A COSM3740379 RK190_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1269a atacctCAGTCCAct CUGGACUG m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-1269b atacctCAGTCCAct CUGGACUG m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-3138 atacctcTGTCCACt UGUGGACA m7b Disrupted HPCB1_25694_G32607.1_26887487
hsa-miR-4257 atACCTCTGtccact CCAGAGGU m7b (m7b->m6b) HPCB1_25694_G32607.1_26887487
hsa-miR-4515 atacctCAGTCCact AGGACUGG m6b Created HPCB1_25694_G32607.1_26887487
hsa-miR-4520-3p atacctCTGTCCAct UUGGACAG m7b Disrupted HPCB1_25694_G32607.1_26887487
hsa-miR-4740-5p ataccTCAGTCCact AGGACUGA m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-6857-3p atacCTCAGTCcact UGACUGAG m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-7162-3p atACCTCAGtccact UCUGAGGU m7b (m6b->m7b) HPCB1_25694_G32607.1_26887487

Mutation Mutation ID Sample Name Cancer Type
chr22:g.26491529A>T COSM4103194 TCGA-CG-4437-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-15b-3p taATGATTCctctgt CGAAUCAU m7b (m6b->m7b) HPCB1_25694_G32607.1_26887487
hsa-miR-202-3p taatgATACCTCTgt AGAGGUAU m8a Disrupted HPCB1_25694_G32607.1_26887487
hsa-miR-3125 taatgaTTCCTCTgt UAGAGGAA m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-3916 taatgaTTCCTCTgt AAGAGGAA m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-4257 taatgatACCTCTGt CCAGAGGU m7b Disrupted HPCB1_25694_G32607.1_26887487
hsa-miR-6847-5p taatgatTCCTCTGt ACAGAGGA m7b Created HPCB1_25694_G32607.1_26887487
hsa-miR-6859-5p taatgaTTCCTCTgt GAGAGGAA m7b Created HPCB1_25694_G32607.1_26887487

Mutation Mutation ID Sample Name Cancer Type
chr22:g.26491503C>A COSM285360 TCGA-AA-A010-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2053 cagacTTAACAatac GUGUUAAU m6b Created HPCB1_25694_G32607.1_26887487
hsa-miR-3611 cagaCTTCACAAtac UUGUGAAG m8a Disrupted HPCB1_25694_G32607.1_26887487

Mutation Mutation ID Sample Name Cancer Type
chr22:g.26491056C>A COSM4582273 CHEWS004 [bone][NS][Ewings_sarcoma-peripheral_primitive_neuroectodermal_tumour][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-135b-3p aaattatCCCTACAt AUGUAGGG m7b Disrupted HPCB1_25693_G32606.1_26887036
hsa-miR-331-5p aaattATACCTAcat CUAGGUAU m7b Created HPCB1_25693_G32606.1_26887036
hsa-miR-4678 aaattATACCTacat AAGGUAUU m6b Created HPCB1_25693_G32606.1_26887036

Mutation Mutation ID Sample Name Cancer Type
chr22:g.26491052T>A COSM3693985 TCGA-AM-5820-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3145-3p agaaaAAATATCcct AGAUAUUU m7b Created HPCB1_25693_G32606.1_26887036
hsa-miR-4775 agaAAAATTAtccct UUAAUUUU m7b Disrupted HPCB1_25693_G32606.1_26887036

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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