SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001013438
Gene Symbol: FXR1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.180912733C>T COSM3774743 TCGA-BT-A2LB-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3200-3p ctttctaCAAGGTac CACCUUGC m6b Disrupted HPTA3_13318_G21188.1_180630518
hsa-miR-3674 cttTCTACAAggtac AUUGUAGA m7b Disrupted HPTA3_13318_G21188.1_180630518
hsa-miR-6813-3p ctttctaCAAGGTac AACCUUGG m6b Disrupted HPTA3_13318_G21188.1_180630518
Mutation Mutation ID Sample Name Cancer Type
chr3:g.180912723G>T COSM729710 TCGA-66-2759-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.180912714G>T COSM357352 LUAD-CHTN-3090415 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1303 gttcgcgTCTCTAAc UUUAGAGA m7b Created HPTA3_13318_G21188.1_180630518

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser