SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001013438
Gene Symbol: FXR1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.180977139A>C COSN8488763 J88_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-520g-3p gtaaataCACTTTGa ACAAAGUG m7b Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-520h gtaaataCACTTTGa ACAAAGUG m7b Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-561-3p gtaaatAAACTTTGa CAAAGUUU m8a Disrupted HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-93-5p gtaaataCACTTTGa CAAAGUGC m7a Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-519d-3p gtaaataCACTTTGa CAAAGUGC m7a Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-3609 gtaaataCACTTTGa CAAAGUGA m7a Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-223-5p gtaAATACACtttga CGUGUAUU m7b Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-20b-5p gtaaataCACTTTGa CAAAGUGC m7a Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488
hsa-miR-17-5p gtaaataCACTTTGa CAAAGUGC m7a Created HHHSH_1303_FXR1|NM_001013438|exon_utr3|-7.83822493657204|0.265797983495488

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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