SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001012981
Gene Symbol: ZKSCAN2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.25240565G>A COSM3508088 TCGA-EE-A29D-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4635 tCTTCAAGgaattag UCUUGAAG m7b Disrupted HPRT3_10299_G13590.1_25251871
hsa-miR-502-5p tcttCAAGGAattag AUCCUUGC m6b Disrupted HPRT3_10299_G13590.1_25251871
hsa-miR-5571-5p tcttcaaAGAATTag CAAUUCUC m6b Created HPRT3_10299_G13590.1_25251871

Mutation Mutation ID Sample Name Cancer Type
chr16:g.25240564G>A COSM3817624 TCGA-D8-A1JA-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4635 CTTCAAGAaattaga UCUUGAAG m8a Created HPRT3_10299_G13590.1_25251871
hsa-miR-4735-5p cttcaagAAATTAGa CCUAAUUU m7b Created HPRT3_10299_G13590.1_25251871
hsa-miR-502-5p cttCAAGGAattaga AUCCUUGC m6b Disrupted HPRT3_10299_G13590.1_25251871
hsa-miR-526b-5p ctTCAAGAaattaga CUCUUGAG m6b Created HPRT3_10299_G13590.1_25251871
hsa-miR-578 cttCAAGAAattaga CUUCUUGU m6b Created HPRT3_10299_G13590.1_25251871

Mutation Mutation ID Sample Name Cancer Type
chr16:g.25240554G>A COSM3508087 TCGA-DA-A3F5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3124-3p ttagacaAGGAAAGc ACUUUCCU m7b Created HPRT3_10299_G13590.1_25251871
hsa-miR-339-5p ttaGACAGGGAaagc UCCCUGUC m8a Disrupted HPRT3_10299_G13590.1_25251871
hsa-miR-4421 ttAGACAGGgaaagc ACCUGUCU m7b (m7b->m6b) HPRT3_10299_G13590.1_25251871
hsa-miR-4446-5p ttagacAGGGAAAgc AUUUCCCU m7b Disrupted HPRT3_10299_G13590.1_25251871
hsa-miR-502-5p ttagaCAAGGAaagc AUCCUUGC m6b Created HPRT3_10299_G13590.1_25251871
hsa-miR-5699-3p ttAGACAGGgaaagc UCCUGUCU m7b (m7b->m6b) HPRT3_10299_G13590.1_25251871
hsa-miR-670-5p ttagaCAGGGAaagc GUCCCUGA m6b Disrupted HPRT3_10299_G13590.1_25251871

Mutation Mutation ID Sample Name Cancer Type
chr16:g.25239984G>A COSM1749511 B104-0 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3119 ctggagAAAAGCCct UGGCUUUU m7b Created HPRT3_10298_G13589.1_25251303
hsa-miR-4768-5p ctgGAGAGAAgccct AUUCUCUC m7b Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-515-5p cTGGAGAAaagccct UUCUCCAA m7a Created HPRT3_10298_G13589.1_25251303
hsa-miR-519e-5p cTGGAGAAaagccct UUCUCCAA m7a Created HPRT3_10298_G13589.1_25251303
hsa-miR-627-3p ctggAGAAAAGccct UCUUUUCU m7b Created HPRT3_10298_G13589.1_25251303
hsa-miR-629-3p ctGGAGAAaagccct GUUCUCCC m6b Created HPRT3_10298_G13589.1_25251303
hsa-miR-6815-3p ctggagAGAAGCCct UGGCUUCU m7b Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-6833-3p ctgGAGAGAAgccct UUUCUCUC m7b Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-942-5p ctggAGAGAAGccct UCUUCUCU m7b Disrupted HPRT3_10298_G13589.1_25251303

Mutation Mutation ID Sample Name Cancer Type
chr16:g.25239979C>G COSM4956695 BCM759T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-27a-5p gagAAGCCCTatgga AGGGCUUA m7a Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-3158-3p gagAAGCCCTatgga AAGGGCUU m7b Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-4446-3p gagaAGCCCTatgga CAGGGCUG m6b Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-5088-5p gagaAGCCCTatgga CAGGGCUC m6b Disrupted HPRT3_10298_G13589.1_25251303
hsa-miR-6815-3p gAGAAGCCctatgga UGGCUUCU m7b Disrupted HPRT3_10298_G13589.1_25251303
Mutation Mutation ID Sample Name Cancer Type
chr16:g.25239976A>T COSM390772 LUAD_E01166 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr16:g.25239765A>G COSN8495773 AOCS-108-1-7 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser