SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001012514
Gene Symbol: ITM2C

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.230878784G>A COSN1235082 HCC111T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1286 caGTCCTGCccccca UGCAGGAC m7b (m7b->m6b) HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-3117-3p cAGTCCTAcccccca AUAGGACU m7b Created HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-3169 CAGTCCTAcccccca UAGGACUG m8a Created HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-328-5p cagtcctGCCCCCCa GGGGGGGC m7b Disrupted HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-486-3p cagtcCTGCCCCcca CGGGGCAG m7b Disrupted HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-6721-5p cagtCCTGCCCccca UGGGCAGG m7b Disrupted HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-6752-5p cagtcctACCCCCCa GGGGGGUG m7a Created HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-6835-5p cagtccTACCCCCca AGGGGGUA m7b Created HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147
hsa-miR-6885-5p cagtcctGCCCCCCa AGGGGGGC m7b Disrupted HHHNE_8957_ITM2C|NM_001012514|exon_utr3|-4.63119278172817|-0.06895486680147

Mutation Mutation ID Sample Name Cancer Type
chr2:g.230875642G>T COSM1737655 P157 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3125 ttcTTCCTCTgtggt UAGAGGAA m7b Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531
hsa-miR-3916 ttcTTCCTCTgtggt AAGAGGAA m7b Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531
hsa-miR-6847-5p ttctTCCTCTGTggt ACAGAGGA m8a Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531
hsa-miR-6859-5p ttcTTCCTCTgtggt GAGAGGAA m7b Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531

Mutation Mutation ID Sample Name Cancer Type
chr2:g.230875641C>T COSM3838819 TCGA-AN-A046-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-298 cttCTTCTGCTgtgg AGCAGAAG m8a Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531
hsa-miR-3185 CTTCTTCTgctgtgg AGAAGAAG m8a Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531
hsa-miR-922 cttctTCTGCTGtgg GCAGCAGA m7b Created HHHNE_8954_ITM2C|NM_001012514|exon_CDS|-5.17089848914644|-0.942797117604531

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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