SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001012279
Gene Symbol: SOGA3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127514942A>T COSM4433696 433 [oesophagus][middle_third][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-135b-3p gagagCCTACAaaaa AUGUAGGG m6b Created HPTA3_16866_G26973.1_127836082
hsa-miR-3674 gagagcCTACAAaaa AUUGUAGA m6b Created HPTA3_16866_G26973.1_127836082
hsa-miR-6806-5p gagaGCCTACAaaaa UGUAGGCA m7a Created HPTA3_16866_G26973.1_127836082
hsa-miR-6822-3p gAGAGCCTacaaaaa AGGCUCUA m7a Created HPTA3_16866_G26973.1_127836082
Mutation Mutation ID Sample Name Cancer Type
chr6:g.127514940C>T COSM1440302 TCGA-G4-6304-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127514932G>A COSM1440301 TCGA-AU-6004-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4328 aAAAACTGccggatc CCAGUUUU m7b Disrupted HPTA3_16866_G26973.1_127836082
hsa-miR-548au-3p aaaAACTGCCggatc UGGCAGUU m7b Disrupted HPTA3_16866_G26973.1_127836082

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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