SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001012241
Gene Symbol: MSL1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.40122670G>A COSM4838205 TCGA-EA-A5ZF-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4518 caatCCTGAGCagcg GCUCAGGG m7a Disrupted HHHNA_9630_MSL1|NM_001012241|exon_utr5|-5.59957814452289|-0.756689793048577
hsa-miR-3159 cAATCCTAagcagcg UAGGAUUA m7a Created HHHNA_9630_MSL1|NM_001012241|exon_utr5|-5.59957814452289|-0.756689793048577
hsa-miR-3664-3p caaTCCTGAGcagcg UCUCAGGA m7b Disrupted HHHNA_9630_MSL1|NM_001012241|exon_utr5|-5.59957814452289|-0.756689793048577
hsa-miR-3934-3p caatCCTGAGCAgcg UGCUCAGG m8a Disrupted HHHNA_9630_MSL1|NM_001012241|exon_utr5|-5.59957814452289|-0.756689793048577
hsa-miR-651-5p caATCCTAAgcagcg UUUAGGAU m7b (m6b->m7b) HHHNA_9630_MSL1|NM_001012241|exon_utr5|-5.59957814452289|-0.756689793048577
hsa-miR-767-3p caatccTGAGCAGcg UCUGCUCA m7b Disrupted HHHNA_9630_MSL1|NM_001012241|exon_utr5|-5.59957814452289|-0.756689793048577
hsa-miR-4518 caatCCTGAGCagcg GCUCAGGG m7a Disrupted HHHNA_9629_MSL1|NM_001012241|exon_utr5|-5.81752867489859|-0.320788732297178
hsa-miR-3159 cAATCCTAagcagcg UAGGAUUA m7a Created HHHNA_9629_MSL1|NM_001012241|exon_utr5|-5.81752867489859|-0.320788732297178
hsa-miR-3664-3p caaTCCTGAGcagcg UCUCAGGA m7b Disrupted HHHNA_9629_MSL1|NM_001012241|exon_utr5|-5.81752867489859|-0.320788732297178
hsa-miR-3934-3p caatCCTGAGCAgcg UGCUCAGG m8a Disrupted HHHNA_9629_MSL1|NM_001012241|exon_utr5|-5.81752867489859|-0.320788732297178
hsa-miR-651-5p caATCCTAAgcagcg UUUAGGAU m7b (m6b->m7b) HHHNA_9629_MSL1|NM_001012241|exon_utr5|-5.81752867489859|-0.320788732297178
hsa-miR-767-3p caatccTGAGCAGcg UCUGCUCA m7b Disrupted HHHNA_9629_MSL1|NM_001012241|exon_utr5|-5.81752867489859|-0.320788732297178

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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