SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010924
Gene Symbol: FAM171A1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.15213669C>T COSM3866920 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1254 ctgtcttTCCAGGCc AGCCUGGA m7b Created HPTA3_2875_G4367.1_15255661
hsa-miR-204-3p ctgtcTTCCCAGgcc GCUGGGAA m7b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-3116 ctgtcttTCCAGGCc UGCCUGGA m7b Created HPTA3_2875_G4367.1_15255661
hsa-miR-3978 ctgtCTTTCCAggcc GUGGAAAG m7b Created HPTA3_2875_G4367.1_15255661
hsa-miR-4646-5p ctgtcTTCCCAGgcc ACUGGGAA m7b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-4747-5p ctgtCTTCCCaggcc AGGGAAGG m6b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-5196-5p ctgtCTTCCCaggcc AGGGAAGG m6b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-6077 ctgTCTTCCCaggcc GGGAAGAG m7a Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-661 ctgtcttCCCAGGCc UGCCUGGG m7b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-7-5p ctGTCTTCCcaggcc UGGAAGAC m7b (m7b->m6b) HPTA3_2875_G4367.1_15255661
hsa-miR-875-3p ctgtcTTTCCAGGcc CCUGGAAA m8a Created HPTA3_2875_G4367.1_15255661
hsa-miR-1254 ctgtcttTCCAGGCc AGCCUGGA m7b Created HPTA3_2875_G4367.1_15255661
hsa-miR-204-3p ctgtcTTCCCAGgcc GCUGGGAA m7b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-3116 ctgtcttTCCAGGCc UGCCUGGA m7b Created HPTA3_2875_G4367.1_15255661
hsa-miR-3978 ctgtCTTTCCAggcc GUGGAAAG m7b Created HPTA3_2875_G4367.1_15255661
hsa-miR-4646-5p ctgtcTTCCCAGgcc ACUGGGAA m7b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-4747-5p ctgtCTTCCCaggcc AGGGAAGG m6b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-5196-5p ctgtCTTCCCaggcc AGGGAAGG m6b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-6077 ctgTCTTCCCaggcc GGGAAGAG m7a Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-661 ctgtcttCCCAGGCc UGCCUGGG m7b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-7-5p ctGTCTTCCcaggcc UGGAAGAC m7b (m7b->m6b) HPTA3_2875_G4367.1_15255661
hsa-miR-875-3p ctgtcTTTCCAGGcc CCUGGAAA m8a Created HPTA3_2875_G4367.1_15255661

Mutation Mutation ID Sample Name Cancer Type
chr10:g.15213664G>A COSM320261 2334191 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6503-5p ttccCAGACCatctc AGGUCUGC m6b Created HPTA3_2875_G4367.1_15255661
hsa-miR-661 ttCCCAGGCcatctc UGCCUGGG m7b (m7b->m6b) HPTA3_2875_G4367.1_15255661
hsa-miR-6735-3p ttccCAGGCCatctc AGGCCUGU m6b Disrupted HPTA3_2875_G4367.1_15255661
hsa-miR-6503-5p ttccCAGACCatctc AGGUCUGC m6b Created HPTA3_2875_G4367.1_15255661
hsa-miR-661 ttCCCAGGCcatctc UGCCUGGG m7b (m7b->m6b) HPTA3_2875_G4367.1_15255661
hsa-miR-6735-3p ttccCAGGCCatctc AGGCCUGU m6b Disrupted HPTA3_2875_G4367.1_15255661

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser