SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010905
Gene Symbol: C6orf58

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr6:g.127590301C>A COSM4635320 HCT8 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.127590289C>T COSM3620220 TCGA-EE-A3AA-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548t-3p ccTGGTTTTTctaaa AAAAACCA m8a Created HPCB1_34582_G44257.1_127911442
hsa-miR-548z cctGGTTTTTctaaa CAAAAACC m7b Created HPCB1_34582_G44257.1_127911442
hsa-miR-3185 cctggTTCTTCTaaa AGAAGAAG m7a Disrupted HPCB1_34582_G44257.1_127911442
hsa-miR-5197-3p cctggtTCTTCTaaa AAGAAGAG m6b Disrupted HPCB1_34582_G44257.1_127911442
hsa-miR-548aa ccTGGTTTTTctaaa AAAAACCA m8a Created HPCB1_34582_G44257.1_127911442
hsa-miR-548ac cctGGTTTTTctaaa CAAAAACC m7b Created HPCB1_34582_G44257.1_127911442
hsa-miR-548ap-3p ccTGGTTTTTctaaa AAAAACCA m8a Created HPCB1_34582_G44257.1_127911442
hsa-miR-548b-3p cctGGTTCTTctaaa CAAGAACC m7b Disrupted HPCB1_34582_G44257.1_127911442
hsa-miR-548bb-3p cctGGTTTTTctaaa CAAAAACC m7b Created HPCB1_34582_G44257.1_127911442
hsa-miR-548d-3p cctGGTTTTTctaaa CAAAAACC m7b Created HPCB1_34582_G44257.1_127911442
hsa-miR-548h-3p cctGGTTTTTctaaa CAAAAACC m7b Created HPCB1_34582_G44257.1_127911442

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser