SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010872
Gene Symbol: FAM83B
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.54941195G>T COSM4423626 2171684 [central_nervous_system][thalamus][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4422 cattgcTGCTTTact AAAAGCAU m6b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-424-5p catTGCTGCTttact CAGCAGCA m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-195-5p catTGCTGCTttact UAGCAGCA m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-186-5p cattgcTTCTTTact CAAAGAAU m6b Created HPRT3_21716_G29003.1_54806002
hsa-miR-16-5p catTGCTGCTttact UAGCAGCA m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-15b-5p catTGCTGCTttact UAGCAGCA m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-15a-5p catTGCTGCTttact UAGCAGCA m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-6838-5p catTGCTGCTTtact AAGCAGCA m8a Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-6835-3p cattgcTGCTTTact AAAAGCAC m6b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-497-5p catTGCTGCTttact CAGCAGCA m7b Disrupted HPRT3_21716_G29003.1_54806002

Mutation Mutation ID Sample Name Cancer Type
chr6:g.54941187C>T COSM3628683 TCGA-D3-A2JD-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-570-3p tcaGTTTTCattgct CGAAAACA m6b Created HPRT3_21716_G29003.1_54806002
hsa-miR-3688-3p tcagTTTCCATtgct UAUGGAAA m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-4261 tcaGTTTCCattgct AGGAAACA m6b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-4738-3p tCAGTTTCcattgct UGAAACUG m7b Disrupted HPRT3_21716_G29003.1_54806002
hsa-miR-548a-3p tCAGTTTTcattgct CAAAACUG m7b Created HPRT3_21716_G29003.1_54806002
hsa-miR-548f-3p tCAGTTTTcattgct AAAAACUG m7b Created HPRT3_21716_G29003.1_54806002
hsa-miR-548e-3p tCAGTTTTcattgct AAAAACUG m7b Created HPRT3_21716_G29003.1_54806002
hsa-miR-548az-3p tCAGTTTTcattgct AAAAACUG m7b Created HPRT3_21716_G29003.1_54806002
hsa-miR-548ar-3p tCAGTTTTcattgct UAAAACUG m7b Created HPRT3_21716_G29003.1_54806002

Mutation Mutation ID Sample Name Cancer Type
chr6:g.54940586C>T COSM137917 cSCCP5 [skin][face][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4786-3p tcattctTGGCTTCg UGAAGCCA m7b Created HPRT3_21715_G29002.1_54805382

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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