SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010872
Gene Symbol: FAM83B
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.54941165G>A COSM597072 TCGA-50-5941-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-515-3p tccaagtGGCACTac GAGUGCCU m6b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-371a-3p tccaagtGGCACTac AAGUGCCG m6b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-371b-3p tccaagtGGCACTac AAGUGCCC m6b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-4252 tccaAGTGGCactac GGCCACUG m6b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-4473 tccaagtAGCACTAc CUAGUGCU m7b Created HPHES_7080_G9435.1_54805962
hsa-miR-5089-3p tccaAGTAGCActac AUGCUACU m7b Created HPHES_7080_G9435.1_54805962
hsa-miR-512-3p tccaagtAGCACTac AAGUGCUG m6b Created HPHES_7080_G9435.1_54805962
hsa-miR-519e-3p tccaagtGGCACTac AAGUGCCU m6b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-520f-3p tccaagtAGCACTac AAGUGCUU m6b Created HPHES_7080_G9435.1_54805962
hsa-miR-3614-5p tCCAAGTGGcactac CCACUUGG m8a (m8a->m7a) HPHES_7080_G9435.1_54805962
hsa-miR-1227-3p tccaaGTGGCACtac CGUGCCAC m7b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-138-1-3p tccAAGTAGCactac GCUACUUC m7a Created HPHES_7080_G9435.1_54805962
hsa-miR-33b-3p tccaagtGGCACTac CAGUGCCU m6b Disrupted HPHES_7080_G9435.1_54805962

Mutation Mutation ID Sample Name Cancer Type
chr6:g.54941151G>T COSM597073 TCGA-50-5049-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6809-3p accAAGAGAAactct CUUCUCUU m7b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-4768-5p accaAGAGAAactct AUUCUCUC m6b Disrupted HPHES_7080_G9435.1_54805962
hsa-miR-4753-3p accAAGAGAAactct UUCUCUUU m7a Disrupted HPHES_7080_G9435.1_54805962

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser