SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001010853
Gene Symbol: PM20D2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.89154816C>T COSM1547287 TCGA-50-5946-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ao-5p TTACTTCTgtgcacc AGAAGUAA m8a Created HPRO6_66164_G79015.1_89864538
hsa-miR-548ax TTACTTCTgtgcacc AGAAGUAA m8a Created HPRO6_66164_G79015.1_89864538

Mutation Mutation ID Sample Name Cancer Type
chr6:g.89154812C>A COSM4161381 PTC-14C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ax tctaTTACTTCcgtg AGAAGUAA m7b Disrupted HPRO6_66164_G79015.1_89864538
hsa-miR-548ao-5p tctaTTACTTCcgtg AGAAGUAA m7b Disrupted HPRO6_66164_G79015.1_89864538

Mutation Mutation ID Sample Name Cancer Type
chr6:g.89154810T>A COSM4171620 2_FL [haematopoietic_and_lymphoid_tissue][lymph_node][lymphoid_neoplasm][follicular_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ao-5p aatctaTTACTTCcg AGAAGUAA m7b Disrupted HPRO6_66164_G79015.1_89864538
hsa-miR-4670-3p aatctaTAACTTCcg UGAAGUUA m7b Created HPRO6_66164_G79015.1_89864538
hsa-miR-548ax aatctaTTACTTCcg AGAAGUAA m7b Disrupted HPRO6_66164_G79015.1_89864538

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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