SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001009922
Gene Symbol: RCHY1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr4:g.75509236C>T COSM1310254 TCGA-DK-A1AC-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-580-5p agATCATTAactaga UAAUGAUU m7a (m6a->m7a) HPCB1_30374_G38847.1_76434439
hsa-miR-3682-3p agATCATCAactaga UGAUGAUA m7a (m7a->m6a) HPCB1_30374_G38847.1_76434439
hsa-miR-569 agatCATTAACTaga AGUUAAUG m8a Created HPCB1_30374_G38847.1_76434439

Mutation Mutation ID Sample Name Cancer Type
chr4:g.75509226G>A COSM1328403 TCGA-61-1733-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-526b-3p ctagatCACTTTaaa GAAAGUGC m6b Created HPCB1_30374_G38847.1_76434439
hsa-miR-548ah-5p ctagaTCACTTTaaa AAAAGUGA m7b Created HPCB1_30374_G38847.1_76434439
hsa-miR-8079 ctaGATCACTttaaa CAGUGAUC m7b Created HPCB1_30374_G38847.1_76434439
hsa-miR-93-5p ctagatCACTTTaaa CAAAGUGC m6b Created HPCB1_30374_G38847.1_76434439
hsa-miR-9-3p ctagatcGCTTTAaa AUAAAGCU m6b Disrupted HPCB1_30374_G38847.1_76434439
hsa-miR-518a-3p ctagatCGCTTTaaa GAAAGCGC m6b Disrupted HPCB1_30374_G38847.1_76434439
hsa-miR-106b-5p ctagatCACTTTAaa UAAAGUGC m7a Created HPCB1_30374_G38847.1_76434439
hsa-miR-1245a ctaGATCACTTtaaa AAGUGAUC m8a Created HPCB1_30374_G38847.1_76434439
hsa-miR-17-5p ctagatCACTTTaaa CAAAGUGC m6b Created HPCB1_30374_G38847.1_76434439
hsa-miR-20a-5p ctagatCACTTTAaa UAAAGUGC m7a Created HPCB1_30374_G38847.1_76434439
hsa-miR-20b-5p ctagatCACTTTaaa CAAAGUGC m6b Created HPCB1_30374_G38847.1_76434439
hsa-miR-3609 ctagaTCACTTTaaa CAAAGUGA m7b Created HPCB1_30374_G38847.1_76434439
hsa-miR-4796-3p ctagatCACTTTAaa UAAAGUGG m7a Created HPCB1_30374_G38847.1_76434439
hsa-miR-106a-5p ctagatCACTTTaaa AAAAGUGC m6b Created HPCB1_30374_G38847.1_76434439
hsa-miR-518b ctagatCGCTTTaaa CAAAGCGC m6b Disrupted HPCB1_30374_G38847.1_76434439
hsa-miR-518c-3p ctagatCGCTTTaaa CAAAGCGC m6b Disrupted HPCB1_30374_G38847.1_76434439
hsa-miR-518d-3p ctagatCGCTTTaaa CAAAGCGC m6b Disrupted HPCB1_30374_G38847.1_76434439
hsa-miR-518f-3p ctagatCGCTTTaaa GAAAGCGC m6b Disrupted HPCB1_30374_G38847.1_76434439
hsa-miR-519d-3p ctagatCACTTTaaa CAAAGUGC m6b Created HPCB1_30374_G38847.1_76434439

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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