SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001009894
Gene Symbol: C12orf29

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.88046891A>G COSM1364695 LIM1215 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4289 aagCACAATGatctc GCAUUGUG m7b Disrupted HPRO6_18896_G22060.1_88440668
hsa-miR-4318 aagCACAGTGatctc CACUGUGG m7a Created HPRO6_18896_G22060.1_88440668
hsa-miR-5008-3p aAGCACAGtgatctc CCUGUGCU m7b Created HPRO6_18896_G22060.1_88440668
hsa-miR-5694 aagcacaATGATCTc CAGAUCAU m7b Disrupted HPRO6_18896_G22060.1_88440668
hsa-miR-6737-3p aAGCACAGtgatctc UCUGUGCU m7b Created HPRO6_18896_G22060.1_88440668
hsa-miR-6760-3p aagcACAGTGatctc ACACUGUC m6b Created HPRO6_18896_G22060.1_88440668
hsa-miR-7157-3p aAGCACAGtgatctc UCUGUGCU m7b Created HPRO6_18896_G22060.1_88440668
hsa-miR-892a aagCACAGTGatctc CACUGUGU m7a Created HPRO6_18896_G22060.1_88440668

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88046879C>A COSM1364694 TCGA-AZ-4616-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4275 ctacctTAATTGaag CCAAUUAC m6b Created HPRO6_18896_G22060.1_88440668

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88046848C>A COSM3720155 PD7398a [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][essential_thrombocythaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-136-5p tataccaAATGGAGc ACUCCAUU m7b Created HPRO6_18895_G22059.1_88440622
hsa-miR-5002-5p tatACCAAATggagc AAUUUGGU m7b Created HPRO6_18895_G22059.1_88440622
Mutation Mutation ID Sample Name Cancer Type
chr12:g.88046843T>C COSM1364693 TCGA-G4-6309-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.88046842A>G COSM1513408 TCGA-99-8028-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-150-3p tcttctTGTACCAca CUGGUACA m7b Created HPRO6_18895_G22059.1_88440622
hsa-miR-3653-3p tCTTCTTAtaccaca CUAAGAAG m7b Disrupted HPRO6_18895_G22059.1_88440622

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88042846G>T COSM2153570 TCGA-12-0616 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-325 tgggctCTACTAGat CCUAGUAG m7b Created HPRO6_18894_G22058.1_88436617
hsa-miR-4732-5p tggGCTCTACtagat UGUAGAGC m7b Created HPRO6_18894_G22058.1_88436617
hsa-miR-554 tgggctcGACTAGat GCUAGUCC m6b Disrupted HPRO6_18894_G22058.1_88436617
hsa-miR-6832-5p tgggCTCTACTagat AGUAGAGA m7a Created HPRO6_18894_G22058.1_88436617

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88042843C>A COSM2153543 TCGA-12-0616 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4733-5p ctTTGGGATcgacta AAUCCCAA m7b (m6b->m7b) HPRO6_18894_G22058.1_88436617

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88042834A>G COSM4045252 TCGA-CG-5721-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3622b-5p cagCCATGCCTttgg AGGCAUGG m8a Created HPRO6_18894_G22058.1_88436617
hsa-miR-3910 cagccATGCCTTTgg AAAGGCAU m8a Created HPRO6_18894_G22058.1_88436617
hsa-miR-548an cagccaTGCCTTTgg AAAAGGCA m7b Created HPRO6_18894_G22058.1_88436617
hsa-miR-548m cagccaTACCTTTGg CAAAGGUA m8a Disrupted HPRO6_18894_G22058.1_88436617

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88040213A>G COSM944209 TCGA-B5-A11U-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106b-3p aCAGTGCGattccaa CCGCACUG m7b Created HPRO6_18893_G22057.1_88433987
hsa-miR-219b-3p acagtGCAATTCcaa AGAAUUGC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-25-3p acaGTGCAATtccaa CAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-32-5p acaGTGCAATtccaa UAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-363-3p acaGTGCAATTccaa AAUUGCAC m8a Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-367-3p acaGTGCAATTccaa AAUUGCAC m8a Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-92a-3p acaGTGCAATtccaa UAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-92b-3p acaGTGCAATtccaa UAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88040209G>A COSM1739948 MAVER-1 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][mantle_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-25-3p atatacaGTGCAATt CAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-32-5p atatacaGTGCAATt UAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-33a-5p atataCAATGCAatt GUGCAUUG m7b Created HPRO6_18893_G22057.1_88433987
hsa-miR-33b-5p atataCAATGCAatt GUGCAUUG m7b Created HPRO6_18893_G22057.1_88433987
hsa-miR-363-3p atatacaGTGCAATt AAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-367-3p atatacaGTGCAATt AAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-4289 atatACAATGCaatt GCAUUGUG m7a Created HPRO6_18893_G22057.1_88433987
hsa-miR-92a-3p atatacaGTGCAATt UAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987
hsa-miR-92b-3p atatacaGTGCAATt UAUUGCAC m7b Disrupted HPRO6_18893_G22057.1_88433987

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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