SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001009894
Gene Symbol: C12orf29

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.88040223G>A COSM3936190 ESCC-178T [oesophagus][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1267 tcCAACAGaaaaagt CCUGUUGA m6b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-129-5p tccaaCAAAAAaagt CUUUUUGC m6b Created HPCB1_9452_G11802.1_88433983
hsa-miR-367-5p tcCAACAGaaaaagt ACUGUUGC m6b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-4652-3p tccAACAGAAaaagt GUUCUGUU m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-4743-3p tccaACAGAAAaagt UUUCUGUC m7a Disrupted HPCB1_9452_G11802.1_88433983

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88040213A>G COSM944209 TCGA-B5-A11U-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106b-3p aCAGTGCGattccaa CCGCACUG m7b Created HPCB1_9452_G11802.1_88433983
hsa-miR-219b-3p acagtGCAATTCcaa AGAAUUGC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-25-3p acaGTGCAATtccaa CAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-32-5p acaGTGCAATtccaa UAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-363-3p acaGTGCAATTccaa AAUUGCAC m8a Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-367-3p acaGTGCAATTccaa AAUUGCAC m8a Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-92a-3p acaGTGCAATtccaa UAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-92b-3p acaGTGCAATtccaa UAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983

Mutation Mutation ID Sample Name Cancer Type
chr12:g.88040209G>A COSM1739948 MAVER-1 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][mantle_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-92b-3p atatacaGTGCAATt UAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-92a-3p atatacaGTGCAATt UAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-367-3p atatacaGTGCAATt AAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-363-3p atatacaGTGCAATt AAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-33b-5p atataCAATGCAatt GUGCAUUG m7b Created HPCB1_9452_G11802.1_88433983
hsa-miR-33a-5p atataCAATGCAatt GUGCAUUG m7b Created HPCB1_9452_G11802.1_88433983
hsa-miR-32-5p atatacaGTGCAATt UAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983
hsa-miR-4289 atatACAATGCaatt GCAUUGUG m7a Created HPCB1_9452_G11802.1_88433983
hsa-miR-25-3p atatacaGTGCAATt CAUUGCAC m7b Disrupted HPCB1_9452_G11802.1_88433983

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser