SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001008495
Gene Symbol: TMEM64

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.90645511T>A COSM4804757 CHC1531T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1228-5p gCCGCCCAgtgcttc GUGGGCGG m7b Created HHHNE_19183_TMEM64|NM_001146273|exon_CDS|-3.95730207675036|-0.593648512910671
hsa-miR-3141 gCCGCCCTgtgcttc GAGGGCGG m7b Disrupted HHHNE_19183_TMEM64|NM_001146273|exon_CDS|-3.95730207675036|-0.593648512910671
hsa-miR-4486 gcCGCCCAGtgcttc GCUGGGCG m7b (m6b->m7b) HHHNE_19183_TMEM64|NM_001146273|exon_CDS|-3.95730207675036|-0.593648512910671

Mutation Mutation ID Sample Name Cancer Type
chr8:g.90645416G>T COSM398390 LUAD-S01356 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3185 gctCTTCTTCgtggg AGAAGAAG m7b Created HHHNE_19182_TMEM64|NM_001146273|exon_CDS|-3.8173315002413|-1.79154323603914
hsa-miR-5197-3p gCTCTTCTTcgtggg AAGAAGAG m8a (m7a->m8a) HHHNE_19182_TMEM64|NM_001146273|exon_CDS|-3.8173315002413|-1.79154323603914
Mutation Mutation ID Sample Name Cancer Type
chr8:g.90645311A>G COSM4407049 CHC307T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr8:g.90645307T>C COSM1458561 TCGA-AA-3663-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4258 atgaTGGCGGGcgtc CCCCGCCA m7b Created HHHNE_19181_TMEM64|NM_001146273|exon_CDS|-5.62281029034708|1.12465310717699
hsa-miR-4707-3p atgatGGCGGGCgtc AGCCCGCC m7b Created HHHNE_19181_TMEM64|NM_001146273|exon_CDS|-5.62281029034708|1.12465310717699
hsa-miR-4258 atgaTGGCGGGcgtc CCCCGCCA m7b Created HHHNE_19181_TMEM64|NM_001146273|exon_CDS|-5.62281029034708|1.12465310717699
hsa-miR-4707-3p atgatGGCGGGCgtc AGCCCGCC m7b Created HHHNE_19181_TMEM64|NM_001146273|exon_CDS|-5.62281029034708|1.12465310717699

Mutation Mutation ID Sample Name Cancer Type
chr8:g.90631682A>T COSM3942813 ESCC-207T [oesophagus][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2115-3p cccaactTTCTGATg CAUCAGAA m7b Created HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203
hsa-miR-2115-3p cccaactTTCTGATg CAUCAGAA m7b Created HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203

Mutation Mutation ID Sample Name Cancer Type
chr8:g.90631667C>T COSM1458558 TCGA-CA-6718-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4671-5p gcaTCTTCGGTtgga ACCGAAGA m8a Disrupted HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203
hsa-miR-4671-5p gcaTCTTCGGTtgga ACCGAAGA m8a Disrupted HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203

Mutation Mutation ID Sample Name Cancer Type
chr8:g.90631661G>T COSM1553457 TCGA-69-7978-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4274 tcggttgGACTGCTt CAGCAGUC m7b Disrupted HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203
hsa-miR-455-3p tcggtTGGACTGCtt GCAGUCCA m8a Disrupted HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203
hsa-miR-4274 tcggttgGACTGCTt CAGCAGUC m7b Disrupted HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203
hsa-miR-455-3p tcggtTGGACTGCtt GCAGUCCA m8a Disrupted HHHNE_19179_TMEM64|NM_001008495|exon_CDS|-4.13320386226574|0.485817462099203

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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