SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007269
Gene Symbol: GEMIN7

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090572C>T COSN15624323
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-425-3p caatgTTCCCGAgcc AUCGGGAA m7b Disrupted HPRO6_38906_G46024.1_45593833
hsa-miR-4261 caaTGTTTCCgagcc AGGAAACA m7b Created HPRO6_38906_G46024.1_45593833
hsa-miR-494-3p caATGTTTCcgagcc UGAAACAU m7b (m6b->m7b) HPRO6_38906_G46024.1_45593833

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090501C>A COSM4609984 SCMC_RM2_ [soft_tissue][striated_muscle][rhabdomyosarcoma][alveolar]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4477b ataCCTTAAagccat AUUAAGGA m6b Created HPRO6_38905_G46023.1_45593762
hsa-miR-4635 atacCTTCAAGccat UCUUGAAG m7b Disrupted HPRO6_38905_G46023.1_45593762
hsa-miR-493-3p atACCTTCAagccat UGAAGGUC m7a (m7a->m6a) HPRO6_38905_G46023.1_45593762
hsa-miR-6126 ataCCTTCAagccat GUGAAGGC m6b Disrupted HPRO6_38905_G46023.1_45593762
hsa-miR-7856-5p ataCCTTAAAgccat UUUUAAGG m7b Created HPRO6_38905_G46023.1_45593762

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090484A>G COSM1394542 TCGA-D5-6927-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-513b-3p tagTGACATTatttc AAAUGUCA m7b Disrupted HPRO6_38905_G46023.1_45593762
hsa-miR-5692a tagtgacATTATTTc CAAAUAAU m7b Disrupted HPRO6_38905_G46023.1_45593762

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090481G>A COSM1394541 TCGA-AD-6895-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-33a-3p atgtagtAACATTat CAAUGUUU m6b Created HPRO6_38905_G46023.1_45593762
hsa-miR-409-3p atgtagtAACATTat GAAUGUUG m6b Created HPRO6_38905_G46023.1_45593762
hsa-miR-513b-3p atgtagTGACATTat AAAUGUCA m7b Disrupted HPRO6_38905_G46023.1_45593762

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090138C>T COSM4481348 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3622a-5p acattccCGTGCCTg CAGGCACG m7b Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-4681 acaTTCCCGTgcctg AACGGGAA m7b Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-5582-5p acattccTGTGCCTg UAGGCACA m7b Created HPRO6_38904_G46022.1_45593376
hsa-miR-564 acattcCCGTGCCTg AGGCACGG m8a Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-613 ACATTCCTgtgcctg AGGAAUGU m8a Created HPRO6_38904_G46022.1_45593376

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090130A>G COSM1471013 TCGA-EJ-7785-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273g-3p tcCAGTGGacattcc ACCACUGC m6b Created HPRO6_38904_G46022.1_45593376
hsa-miR-4436b-5p tccAGTGGACattcc GUCCACUU m7a Created HPRO6_38904_G46022.1_45593376
hsa-miR-6509-3p tcCAGTGGAcattcc UUCCACUG m7b (m6b->m7b) HPRO6_38904_G46022.1_45593376
hsa-miR-653-3p tCCAGTGAAcattcc UUCACUGG m8a (m8a->m7a) HPRO6_38904_G46022.1_45593376

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090128T>C COSM4079289 TCGA-BR-6802-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181b-2-3p actcCAGTGAacatt CUCACUGA m6b Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-181b-3p actcCAGTGAacatt CUCACUGA m6b Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-3135b aCTCCAGCgaacatt GGCUGGAG m7b Created HPRO6_38904_G46022.1_45593376
hsa-miR-4420 actcCAGTGAacatt GUCACUGA m6b Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-639 actcCAGCGAacatt AUCGCUGC m6b Created HPRO6_38904_G46022.1_45593376
hsa-miR-653-3p actCCAGTGAAcatt UUCACUGG m8a Disrupted HPRO6_38904_G46022.1_45593376

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090124C>A COSM3823398 TCGA-GM-A3XN-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1183 gcaaaCTACAGTGaa CACUGUAG m8a Created HPRO6_38904_G46022.1_45593376
hsa-miR-1208 gcaaactACAGTGAa UCACUGUU m7a Created HPRO6_38904_G46022.1_45593376
hsa-miR-20b-3p gcaaACTACAGTgaa ACUGUAGU m8a Created HPRO6_38904_G46022.1_45593376
hsa-miR-653-3p gcaaactCCAGTGAa UUCACUGG m7b Disrupted HPRO6_38904_G46022.1_45593376
hsa-miR-6760-3p gcaaactACAGTGaa ACACUGUC m6b Created HPRO6_38904_G46022.1_45593376

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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