SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007269
Gene Symbol: GEMIN7

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090501C>A COSM4609984 SCMC_RM2_ [soft_tissue][striated_muscle][rhabdomyosarcoma][alveolar]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-7856-5p ataCCTTAAAgccat UUUUAAGG m7b Created HPCB1_19845_G24959.1_45593762
hsa-miR-4477b ataCCTTAAagccat AUUAAGGA m6b Created HPCB1_19845_G24959.1_45593762
hsa-miR-4635 atacCTTCAAGccat UCUUGAAG m7b Disrupted HPCB1_19845_G24959.1_45593762
hsa-miR-493-3p atACCTTCAagccat UGAAGGUC m7a (m7a->m6a) HPCB1_19845_G24959.1_45593762
hsa-miR-6126 ataCCTTCAagccat GUGAAGGC m6b Disrupted HPCB1_19845_G24959.1_45593762

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090484A>G COSM1394542 TCGA-D5-6927-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5692a tagtgacATTATTTc CAAAUAAU m7b Disrupted HPCB1_19845_G24959.1_45593762
hsa-miR-513b-3p tagTGACATTatttc AAAUGUCA m7b Disrupted HPCB1_19845_G24959.1_45593762

Mutation Mutation ID Sample Name Cancer Type
chr19:g.45090481G>A COSM1394541 TCGA-AD-6895-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-33a-3p atgtagtAACATTat CAAUGUUU m6b Created HPCB1_19845_G24959.1_45593762
hsa-miR-409-3p atgtagtAACATTat GAAUGUUG m6b Created HPCB1_19845_G24959.1_45593762
hsa-miR-513b-3p atgtagTGACATTat AAAUGUCA m7b Disrupted HPCB1_19845_G24959.1_45593762

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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