SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007237
Gene Symbol: IGSF3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr1:g.116577442G>A COSM4443149 C658 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1180-3p aagaGCCGGAActcc UUUCCGGC m7b Disrupted HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-148b-5p aagagcCAGAACTcc AAGUUCUG m7b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-149-5p aaGAGCCAGAactcc UCUGGCUC m8a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-3064-5p aagAGCCAGAactcc UCUGGCUG m7a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-4794 aagAGCCAGAactcc UCUGGCUA m7a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6504-5p aagAGCCAGAactcc UCUGGCUG m7a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-664a-5p aagAGCCAGaactcc ACUGGCUA m6b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6741-3p aAGAGCCGgaactcc UCGGCUCU m7b Disrupted HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6874-3p aagagcCAGAACTcc CAGUUCUG m7b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-1180-3p aagaGCCGGAActcc UUUCCGGC m7b Disrupted HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-148b-5p aagagcCAGAACTcc AAGUUCUG m7b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-149-5p aaGAGCCAGAactcc UCUGGCUC m8a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-3064-5p aagAGCCAGAactcc UCUGGCUG m7a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-4794 aagAGCCAGAactcc UCUGGCUA m7a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6504-5p aagAGCCAGAactcc UCUGGCUG m7a Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-664a-5p aagAGCCAGaactcc ACUGGCUA m6b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6741-3p aAGAGCCGgaactcc UCGGCUCU m7b Disrupted HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6874-3p aagagcCAGAACTcc CAGUUCUG m7b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227

Mutation Mutation ID Sample Name Cancer Type
chr1:g.116577439A>G COSM1333047 TCGA-AA-3815-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4633-3p agccggAGCTCCagc AGGAGCUA m6b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6500-5p agccggAGCTCCagc AGGAGCUA m6b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6874-5p agccggAGCTCCAgc AUGGAGCU m7b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-1180-3p aGCCGGAActccagc UUUCCGGC m7b Disrupted HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-4633-3p agccggAGCTCCagc AGGAGCUA m6b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6500-5p agccggAGCTCCagc AGGAGCUA m6b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227
hsa-miR-6874-5p agccggAGCTCCAgc AUGGAGCU m7b Created HHHNA_1541_IGSF3|NM_001007237|exon_CDS|-5.27057577730255|0.96539335384227

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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