SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007026
Gene Symbol: ATN1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.6938614G>A COSM943087 T3080 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-574-5p gccttgCACACTCtc UGAGUGUG m7b Created HPRT3_5654_G7435.1_7047775
hsa-miR-648 gccttGCACACTctc AAGUGUGC m7b Created HPRT3_5654_G7435.1_7047775
hsa-miR-933 gcctTGCGCACtctc UGUGCGCA m7b Disrupted HPRT3_5654_G7435.1_7047775
hsa-let-7i-3p gccTTGCGCActctc CUGCGCAA m7b Disrupted HPRT3_5654_G7435.1_7047775

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6938613C>T COSM4664123 T3603 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7i-3p agccTTGCGCActct CUGCGCAA m7b Disrupted HPRT3_5654_G7435.1_7047775
hsa-miR-4457 agCCTTGTGcactct UCACAAGG m7b (m6b->m7b) HPRT3_5654_G7435.1_7047775
hsa-miR-4708-3p aGCCTTGCgcactct AGCAAGGC m7b Disrupted HPRT3_5654_G7435.1_7047775
hsa-miR-933 agcctTGCGCACtct UGUGCGCA m7b Disrupted HPRT3_5654_G7435.1_7047775

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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