SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007026
Gene Symbol: ATN1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940983C>T COSM3968416 TCGA-HT-7854-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255a ttcCTCATCCTctgc AGGAUGAG m8a Created HPRO6_17349_G20292.1_7050162
hsa-miR-1255b-5p ttcCTCATCCtctgc CGGAUGAG m7b Created HPRO6_17349_G20292.1_7050162
hsa-miR-3605-5p ttcctCATCCTCtgc UGAGGAUG m7b Created HPRO6_17349_G20292.1_7050162
hsa-miR-4710 ttCCTCACCCtctgc GGGUGAGG m8a Disrupted HPRO6_17349_G20292.1_7050162
hsa-miR-6804-5p ttcctCACCCTCtgc UGAGGGUG m7b Disrupted HPRO6_17349_G20292.1_7050162
hsa-miR-6847-5p ttcctcaTCCTCTGc ACAGAGGA m7b Created HPRO6_17349_G20292.1_7050162

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940951G>A COSM4664124 T578 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1207-3p ctacCCAGCTGgaac UCAGCUGG m7b Disrupted HPRO6_17348_G20291.1_7050096
hsa-miR-145-5p ctacccAACTGGAac GUCCAGUU m7b Created HPRO6_17348_G20291.1_7050096
hsa-miR-4259 ctaCCCAACTGgaac CAGUUGGG m8a Created HPRO6_17348_G20291.1_7050096
hsa-miR-4267 ctacccAGCTGGAac UCCAGCUC m7a Disrupted HPRO6_17348_G20291.1_7050096
hsa-miR-5195-3p ctacccAACTGGAac AUCCAGUU m7b Created HPRO6_17348_G20291.1_7050096
hsa-miR-5589-5p ctACCCAGCtggaac GGCUGGGU m7b (m7b->m6b) HPRO6_17348_G20291.1_7050096

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940941C>T COSM695263 TCGA-60-2709-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4713-3p cccGGATCCCctacc UGGGAUCC m7b Disrupted HPRO6_17348_G20291.1_7050096
hsa-miR-5584-5p cccggaTTCCCTacc CAGGGAAA m6b Created HPRO6_17348_G20291.1_7050096
hsa-miR-6750-5p cccggaTTCCCTacc CAGGGAAC m6b Created HPRO6_17348_G20291.1_7050096
hsa-miR-6822-5p cccggaTTCCCTacc CAGGGAAC m6b Created HPRO6_17348_G20291.1_7050096
hsa-miR-6824-5p cccggaTCCCCTACc GUAGGGGA m8a Disrupted HPRO6_17348_G20291.1_7050096
hsa-miR-9500 cccggaTTCCCTacc AAGGGAAG m6b Created HPRO6_17348_G20291.1_7050096

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940936C>A COSM943090 TCGA-D1-A163-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4490 ccTTACCAGgatccc UCUGGUAA m7b (m6b->m7b) HPRO6_17348_G20291.1_7050096
hsa-miR-555 cCTTACCCggatccc AGGGUAAG m7b Disrupted HPRO6_17348_G20291.1_7050096

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6940925C>T COSM2100264 HT115 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4725-5p tCAGGGTCTcacctt AGACCCUG m8a (m8a->m7a) HPRO6_17348_G20291.1_7050096
hsa-miR-504-5p tCAGGGTCTcacctt AGACCCUG m8a (m8a->m7a) HPRO6_17348_G20291.1_7050096
hsa-miR-6732-3p tCAGGGTTtcacctt UAACCCUG m7b Created HPRO6_17348_G20291.1_7050096

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6937112C>T COSM127382 HN_62298 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3978 ccCTTTCCACggtca GUGGAAAG m8a Disrupted HPRO6_17347_G20290.1_7046261
hsa-miR-5681a CCCTTTCTacggtca AGAAAGGG m8a Created HPRO6_17347_G20290.1_7046261
hsa-miR-6730-5p cCCTTTCTacggtca AGAAAGGU m7a Created HPRO6_17347_G20290.1_7046261

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6937099C>T COSM243105 PR-00-1165 [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4662a-5p acctctTTGGCTAcc UUAGCCAA m7b Created HPRO6_17347_G20290.1_7046261
hsa-miR-4671-5p accTCTTCGGctacc ACCGAAGA m7b Disrupted HPRO6_17347_G20290.1_7046261
hsa-miR-583 aCCTCTTTGgctacc CAAAGAGG m8a (m7a->m8a) HPRO6_17347_G20290.1_7046261

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6937091C>A COSM4147430 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-377-5p cggtcaCAACCTCTt AGAGGUUG m8a Created HPRO6_17347_G20290.1_7046261
hsa-miR-6086 cggtcaCAACCTCtt GGAGGUUG m7b Created HPRO6_17347_G20290.1_7046261
hsa-miR-6134 cggtcaCCACCTCtt UGAGGUGG m7b Disrupted HPRO6_17347_G20290.1_7046261
hsa-miR-6808-3p cGGTCACAacctctt GUGUGACC m7b Created HPRO6_17347_G20290.1_7046261
hsa-miR-758-3p cgGTCACAAcctctt UUUGUGAC m7b (m6b->m7b) HPRO6_17347_G20290.1_7046261
hsa-miR-7973 cGGTCACAacctctt UGUGACCC m7a Created HPRO6_17347_G20290.1_7046261

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6936716C>A COSM4995175 NPC18F [upper_aerodigestive_tract][pharynx][carcinoma][nasopharyngeal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-133a-5p atcaccACCAGCaac AGCUGGUA m6b Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-138-5p atcacCACCAGCaac AGCUGGUG m7b Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-323a-5p atcACCACCagcaac AGGUGGUC m6b Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-4299 atcacCACCAGCaac GCUGGUGA m7a Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-4456 atcaCCACCAGcaac CCUGGUGG m7b Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-548q atcacCACCAGCaac GCUGGUGC m7a Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-6131 atcaccACCAGCaac GGCUGGUC m6b Disrupted HPRO6_17346_G20289.1_7045866

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6936697C>T COSM4990299 S09-31237-TP [skin][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2053 ccagtcTTAACACat GUGUUAAU m7a Created HPRO6_17346_G20289.1_7045866
hsa-miR-208a-3p ccaGTCTTAacacat AUAAGACG m6b Created HPRO6_17346_G20289.1_7045866
hsa-miR-208b-3p ccaGTCTTAacacat AUAAGACG m6b Created HPRO6_17346_G20289.1_7045866
hsa-miR-3672 ccAGTCTCAacacat AUGAGACU m7b (m7b->m6b) HPRO6_17346_G20289.1_7045866
hsa-miR-4432 ccAGTCTTaacacat AAAGACUC m6b Created HPRO6_17346_G20289.1_7045866
hsa-miR-499a-5p ccAGTCTTAAcacat UUAAGACU m8a Created HPRO6_17346_G20289.1_7045866
hsa-miR-653-5p ccagtcTCAACACat GUGUUGAA m7a Disrupted HPRO6_17346_G20289.1_7045866
hsa-miR-6864-3p ccAGTCTCAacacat GUGAGACU m7b (m7b->m6b) HPRO6_17346_G20289.1_7045866
hsa-miR-8087 ccAGTCTTaacacat GAAGACUU m6b Created HPRO6_17346_G20289.1_7045866

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6935856C>T COSM1705007 YURIF [NS][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-490-5p tcatgctTCCATGGa CCAUGGAU m7a Created HPRO6_17345_G20287.1_7044998
hsa-miR-6079 tcatGCTTCCAtgga UUGGAAGC m7b Created HPRO6_17345_G20287.1_7044998
hsa-miR-6090 tcatGCTCCCatgga GGGGAGCG m6b Disrupted HPRO6_17345_G20287.1_7044998
hsa-miR-671-5p tcatGCTTCCatgga AGGAAGCC m6b Created HPRO6_17345_G20287.1_7044998
hsa-miR-6726-5p tcatGCTCCCatgga CGGGAGCU m6b Disrupted HPRO6_17345_G20287.1_7044998
hsa-miR-6828-5p tcaTGCTTCCatgga AGGAAGCA m7b Created HPRO6_17345_G20287.1_7044998
hsa-miR-6871-5p tcatgCTCCCATGga CAUGGGAG m8a Disrupted HPRO6_17345_G20287.1_7044998
hsa-miR-920 tcatGCTCCCatgga GGGGAGCU m6b Disrupted HPRO6_17345_G20287.1_7044998

Mutation Mutation ID Sample Name Cancer Type
chr12:g.6935845G>A COSM1476882 TCGA-BH-A1F6-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-144-5p cccactgGATATCat GGAUAUCA m6b Disrupted HPRO6_17345_G20287.1_7044998
hsa-miR-3145-3p cccactgAATATCat AGAUAUUU m6b Created HPRO6_17345_G20287.1_7044998
hsa-miR-4276 ccCACTGAatatcat CUCAGUGA m6b Created HPRO6_17345_G20287.1_7044998
hsa-miR-5195-3p cccACTGGATatcat AUCCAGUU m7a Disrupted HPRO6_17345_G20287.1_7044998
hsa-miR-6074 cccacTGAATATCat GAUAUUCA m8a Created HPRO6_17345_G20287.1_7044998

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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