SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001006610
Gene Symbol: SIAH1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.48362101C>A COSM971032 TCGA-D1-A16X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-147a aactctgCCACACAc GUGUGUGG m7b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-3688-5p aactcTGCCACacac AGUGGCAA m6b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-592 aactcTGACACAcac UUGUGUCA m7b Created HPCB1_16161_G20327.1_48396031
hsa-miR-644a aactctGCCACACac AGUGUGGC m7b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-7108-5p aactctGCCACACac GUGUGGCC m7a Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-891a-3p aactcTGCCACacac AGUGGCAC m6b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-147a aactctgCCACACAc GUGUGUGG m7b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-3688-5p aactcTGCCACacac AGUGGCAA m6b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-592 aactcTGACACAcac UUGUGUCA m7b Created HPCB1_16161_G20327.1_48396031
hsa-miR-644a aactctGCCACACac AGUGUGGC m7b Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-7108-5p aactctGCCACACac GUGUGGCC m7a Disrupted HPCB1_16161_G20327.1_48396031
hsa-miR-891a-3p aactcTGCCACacac AGUGGCAC m6b Disrupted HPCB1_16161_G20327.1_48396031

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48361915C>G COSM4437937 472 [large_intestine][NS][adenoma][tubular]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p cattAATCTTCctgg AGAAGAUU m7b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-873-5p cattaatGTTCCTGg GCAGGAAC m7b Created HPCB1_16160_G20326.1_48395823
hsa-miR-4699-5p cattAATCTTCctgg AGAAGAUU m7b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-873-5p cattaatGTTCCTGg GCAGGAAC m7b Created HPCB1_16160_G20326.1_48395823

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48361903G>A COSM4956244 BCM723T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29a-3p TGGTGCTAttgactg UAGCACCA m8a Created HPCB1_16160_G20326.1_48395823
hsa-miR-29b-3p TGGTGCTAttgactg UAGCACCA m8a Created HPCB1_16160_G20326.1_48395823
hsa-miR-29c-3p TGGTGCTAttgactg UAGCACCA m8a Created HPCB1_16160_G20326.1_48395823
hsa-miR-421 tggtgCTGTTGActg AUCAACAG m7b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-4709-5p tggtgCTGTTGactg ACAACAGU m6b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-505-3p tggtgcTGTTGACtg CGUCAACA m7b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-5682 tGGTGCTAttgactg GUAGCACC m7b Created HPCB1_16160_G20326.1_48395823
hsa-miR-29a-3p TGGTGCTAttgactg UAGCACCA m8a Created HPCB1_16160_G20326.1_48395823
hsa-miR-29b-3p TGGTGCTAttgactg UAGCACCA m8a Created HPCB1_16160_G20326.1_48395823
hsa-miR-29c-3p TGGTGCTAttgactg UAGCACCA m8a Created HPCB1_16160_G20326.1_48395823
hsa-miR-421 tggtgCTGTTGActg AUCAACAG m7b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-4709-5p tggtgCTGTTGactg ACAACAGU m6b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-505-3p tggtgcTGTTGACtg CGUCAACA m7b Disrupted HPCB1_16160_G20326.1_48395823
hsa-miR-5682 tGGTGCTAttgactg GUAGCACC m7b Created HPCB1_16160_G20326.1_48395823

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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