SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001006610
Gene Symbol: SIAH1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.48362101C>A COSM971032 TCGA-D1-A16X-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-147a aactctgCCACACAc GUGUGUGG m7b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-3688-5p aactcTGCCACacac AGUGGCAA m6b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-592 aactcTGACACAcac UUGUGUCA m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-644a aactctGCCACACac AGUGUGGC m7b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-7108-5p aactctGCCACACac GUGUGGCC m7a Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-891a-3p aactcTGCCACacac AGUGGCAC m6b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-147a aactctgCCACACAc GUGUGUGG m7b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-3688-5p aactcTGCCACacac AGUGGCAA m6b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-592 aactcTGACACAcac UUGUGUCA m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-644a aactctGCCACACac AGUGUGGC m7b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-7108-5p aactctGCCACACac GUGUGGCC m7a Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-891a-3p aactcTGCCACacac AGUGGCAC m6b Disrupted HHRBC_4949_BC3-2of3-SCL_441

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48362073A>C COSM4939418 TCGA-LG-A6GG-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6515-3p caTGAAGAGctctgt UCUCUUCA m7b (m7b->m6b) HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-6515-3p caTGAAGAGctctgt UCUCUUCA m7b (m7b->m6b) HHRBC_4949_BC3-2of3-SCL_441

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48362068T>A COSM1709132 YUDATE [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1304-3p agagctCAGTGAGtt UCUCACUG m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-181b-2-3p agagcTCAGTGAGtt CUCACUGA m8a Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-181b-3p agagcTCAGTGAGtt CUCACUGA m8a Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-3680-5p agagctcAGTGAGTt GACUCACU m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-4420 agagcTCAGTGAgtt GUCACUGA m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-1304-3p agagctCAGTGAGtt UCUCACUG m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-181b-2-3p agagcTCAGTGAGtt CUCACUGA m8a Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-181b-3p agagcTCAGTGAGtt CUCACUGA m8a Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-3680-5p agagctcAGTGAGTt GACUCACU m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-4420 agagcTCAGTGAgtt GUCACUGA m7b Created HHRBC_4949_BC3-2of3-SCL_441

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48362059A>C COSM148072 GC4_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3142 tgagtttAGGCCTTa AAGGCCUU m7a Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-3142 tgagtttAGGCCTTa AAGGCCUU m7a Disrupted HHRBC_4949_BC3-2of3-SCL_441

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48361994G>A COSM971029 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3675-5p ctgtaatGCCCCATc UAUGGGGC m7b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-486-3p ctgtaaTGCCCCatc CGGGGCAG m6b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-503-3p ctgtAATACCCCatc GGGGUAUU m8a Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-6504-3p CTGTAATGccccatc CAUUACAG m8a Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-6890-5p ctgtaatACCCCATc CAUGGGGU m7b Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-3675-5p ctgtaatGCCCCATc UAUGGGGC m7b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-486-3p ctgtaaTGCCCCatc CGGGGCAG m6b Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-503-3p ctgtAATACCCCatc GGGGUAUU m8a Created HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-6504-3p CTGTAATGccccatc CAUUACAG m8a Disrupted HHRBC_4949_BC3-2of3-SCL_441
hsa-miR-6890-5p ctgtaatACCCCATc CAUGGGGU m7b Created HHRBC_4949_BC3-2of3-SCL_441

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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