SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001006610
Gene Symbol: SIAH1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.48362147A>T COSM3773751 TCGA-B0-4697-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1278 attCAGTACTtttcc UAGUACUG m7b Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-3133 attcaGTTCTTTtcc UAAAGAAC m7b Created HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-4511 attcAGTTCTTttcc GAAGAACU m7b Created HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-548av-5p attcaGTACTTTTcc AAAAGUAC m8a Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-548k attcaGTACTTTTcc AAAAGUAC m8a Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-548n attcagTACTTTTcc CAAAAGUA m7b Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-8054 attcaGTACTTTtcc GAAAGUAC m7b Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-1278 attCAGTACTtttcc UAGUACUG m7b Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-3133 attcaGTTCTTTtcc UAAAGAAC m7b Created HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-4511 attcAGTTCTTttcc GAAGAACU m7b Created HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-548av-5p attcaGTACTTTTcc AAAAGUAC m8a Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-548k attcaGTACTTTTcc AAAAGUAC m8a Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-548n attcagTACTTTTcc CAAAAGUA m7b Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599
hsa-miR-8054 attcaGTACTTTtcc GAAAGUAC m7b Disrupted HHKTA_45854_NM_001006610|751|790|1.60091381891501|0.53109123778599

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48361935T>C COSM1287900 TARGET-30-PARGKK [autonomic_ganglia][NS][neuroblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ae-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548ah-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548aj-3p atAGTTTTTcttgct UAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548am-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548aq-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548j-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548x-3p atAGTTTTTcttgct UAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548ae-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548ah-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548aj-3p atAGTTTTTcttgct UAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548am-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548aq-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548j-3p atAGTTTTTcttgct CAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-548x-3p atAGTTTTTcttgct UAAAAACU m7b (m7b->m6b) HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48361915C>G COSM4437937 472 [large_intestine][NS][adenoma][tubular]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4699-5p cattAATCTTCctgg AGAAGAUU m7b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-873-5p cattaatGTTCCTGg GCAGGAAC m7b Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-4699-5p cattAATCTTCctgg AGAAGAUU m7b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-873-5p cattaatGTTCCTGg GCAGGAAC m7b Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599

Mutation Mutation ID Sample Name Cancer Type
chr16:g.48361903G>A COSM4956244 BCM723T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-29a-3p TGGTGCTAttgactg UAGCACCA m8a Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-29b-3p TGGTGCTAttgactg UAGCACCA m8a Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-29c-3p TGGTGCTAttgactg UAGCACCA m8a Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-421 tggtgCTGTTGActg AUCAACAG m7b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-4709-5p tggtgCTGTTGactg ACAACAGU m6b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-505-3p tggtgcTGTTGACtg CGUCAACA m7b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-5682 tGGTGCTAttgactg GUAGCACC m7b Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-29a-3p TGGTGCTAttgactg UAGCACCA m8a Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-29b-3p TGGTGCTAttgactg UAGCACCA m8a Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-29c-3p TGGTGCTAttgactg UAGCACCA m8a Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-421 tggtgCTGTTGActg AUCAACAG m7b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-4709-5p tggtgCTGTTGactg ACAACAGU m6b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-505-3p tggtgcTGTTGACtg CGUCAACA m7b Disrupted HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599
hsa-miR-5682 tGGTGCTAttgactg GUAGCACC m7b Created HHKTA_12779_NM_001006610|976|1015|5.53829645462491|0.53109123778599

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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