SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001006109
Gene Symbol: HMCES

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.129304682G>C COSM419845 TCGA-BT-A0YX-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1236-3p aaaGGAAGAGtcaga CCUCUUCC m7b Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-3136-5p aaaggaaCAGTCAGa CUGACUGA m7a Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-345-5p aaaggaaGAGTCAGa GCUGACUC m7b Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-943 aaaggaACAGTCAGa CUGACUGU m8a Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606

Mutation Mutation ID Sample Name Cancer Type
chr3:g.129304672T>G COSM309724 S00945 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1304-5p aaacaCCTCAAAagg UUUGAGGC m7a Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-4746-3p aaaCACCGCaaaagg AGCGGUGC m6b Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-6134 aaaCACCTCAaaagg UGAGGUGG m7a Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-7854-3p aaaCACCTCAaaagg UGAGGUGA m7a Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-8055 aaacacCTCAAAagg CUUUGAGC m6b Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606

Mutation Mutation ID Sample Name Cancer Type
chr3:g.129304670C>T COSM3060046 TCGA-BR-8361-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f aaaaaCATCTCaaaa GGAGAUGG m6b Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-1304-5p aaaaacaCCTCAAAa UUUGAGGC m7a Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-143-3p aaaaaCATCTCAaaa UGAGAUGA m7a Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-4307 aAAAACATctcaaaa AAUGUUUU m7b Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-4708-5p aaaaaCATCTCaaaa AGAGAUGC m6b Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-4770 aaaaaCATCTCAaaa UGAGAUGA m7a Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-6088 aaaaaCATCTCaaaa AGAGAUGA m6b Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-6134 aaaaaCACCTCAaaa UGAGGUGG m7a Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-7854-3p aaaaaCACCTCAaaa UGAGGUGA m7a Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606

Mutation Mutation ID Sample Name Cancer Type
chr3:g.129304663A>T COSM309723 S00945 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1303 aagaCTCTAAAacac UUUAGAGA m7a Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-5007-5p aAGACTCTAaaacac UAGAGUCU m8a (m7a->m8a) HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-627-5p aAGACTCAaaaacac GUGAGUCU m7b Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-8055 aagaCTCAAAaacac CUUUGAGC m6b Disrupted HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-8081 aaGACTCAAaaacac CUUGAGUC m7b (m7b->m6b) HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606
hsa-miR-924 AAGACTCTaaaacac AGAGUCUU m8a Created HHHNE_2510_C3orf37|NM_001006109|exon_CDS|-5.10893265637514|1.43331249110606

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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