SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005739
Gene Symbol: VPS54

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.63893109G>A COSN1241287 HCC42T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1179 ctaGAATGCTctgta AAGCAUUC m7b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-4797-5p ctagaatACTCTGTa GACAGAGU m7b Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-496 ctagAATACTCtgta UGAGUAUU m7b Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-630 ctAGAATACTctgta AGUAUUCU m8a Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-6501-3p ctagaaTGCTCTGta CCAGAGCA m7b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-1179 ctaGAATGCTctgta AAGCAUUC m7b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-4797-5p ctagaatACTCTGTa GACAGAGU m7b Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-496 ctagAATACTCtgta UGAGUAUU m7b Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-630 ctAGAATACTctgta AGUAUUCU m8a Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-6501-3p ctagaaTGCTCTGta CCAGAGCA m7b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466

Mutation Mutation ID Sample Name Cancer Type
chr2:g.63893108C>T COSN1241285 HCC42T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6501-3p tagaaTGCTCTGtat CCAGAGCA m7b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-4797-5p tagaatgCTCTGTat GACAGAGU m6b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-543 taGAATGTTctgtat AAACAUUC m7b (m6b->m7b) HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-589-3p tagaaTGTTCTGtat UCAGAACA m7b Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-6501-3p tagaaTGCTCTGtat CCAGAGCA m7b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-1179 taGAATGCTctgtat AAGCAUUC m7b (m7b->m6b) HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-1179 taGAATGCTctgtat AAGCAUUC m7b (m7b->m6b) HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-4797-5p tagaatgCTCTGTat GACAGAGU m6b Disrupted HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-543 taGAATGTTctgtat AAACAUUC m7b (m6b->m7b) HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466
hsa-miR-589-3p tagaaTGTTCTGtat UCAGAACA m7b Created HHHNA_13650_VPS54|NM_001005739|exon_utr3|-5.02708979584325|3.04192893686466

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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