SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005463
Gene Symbol: EBF3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.129877807G>T COSM1504619 TCGA-95-7948-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302a-5p actgtTTTAAGaatg ACUUAAAC m6b Created HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-6715b-3p actGTTTGAagaatg CUCAAACC m6b Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-676-5p actgtTTGAAGAatg UCUUCAAC m7a Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-302a-5p actgtTTTAAGaatg ACUUAAAC m6b Created HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-6715b-3p actGTTTGAagaatg CUCAAACC m6b Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-676-5p actgtTTGAAGAatg UCUUCAAC m7a Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361

Mutation Mutation ID Sample Name Cancer Type
chr10:g.129877791C>T COSM3435714 TCGA-FS-A4F0-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-296-3p aggCAACCCTCgaga GAGGGUUG m8a Disrupted HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-4423-5p AGGCAACTctcgaga AGUUGCCU m8a Created HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-296-3p aggCAACCCTCgaga GAGGGUUG m8a Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-4423-5p AGGCAACTctcgaga AGUUGCCU m8a Created HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-296-3p aggCAACCCTCgaga GAGGGUUG m8a Disrupted HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-4423-5p AGGCAACTctcgaga AGUUGCCU m8a Created HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-296-3p aggCAACCCTCgaga GAGGGUUG m8a Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-4423-5p AGGCAACTctcgaga AGUUGCCU m8a Created HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361

Mutation Mutation ID Sample Name Cancer Type
chr10:g.129877786A>G COSM3396992 TCGA-14-4157-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4740-3p accCTCGGGatatgc GCCCGAGA m6b Created HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-516a-5p accCTCGAGAtatgc UUCUCGAG m7b Disrupted HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-4740-3p accCTCGGGatatgc GCCCGAGA m6b Created HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-516a-5p accCTCGAGAtatgc UUCUCGAG m7b Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-4740-3p accCTCGGGatatgc GCCCGAGA m6b Created HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-516a-5p accCTCGAGAtatgc UUCUCGAG m7b Disrupted HHHSE_5298_EBF3|NM_001005463|exon_CDS|-5.180237616059|-0.394787351221127
hsa-miR-4740-3p accCTCGGGatatgc GCCCGAGA m6b Created HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361
hsa-miR-516a-5p accCTCGAGAtatgc UUCUCGAG m7b Disrupted HHHSE_5299_EBF3|NM_001005463|exon_CDS|-4.70205652831726|0.561574824262361

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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