SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005463
Gene Symbol: EBF3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.129877831C>T COSM2022835 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1224-5p agttttTCCTCAagt GUGAGGAC m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-3148 agTTTTTCCtcaagt UGGAAAAA m7b (m7b->m6b) HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-3915 agtttTTCCTCAAgt UUGAGGAA m8a Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-3928-3p agtttTTCCTCaagt GGAGGAAC m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-4496 agttTTTCCTCaagt GAGGAAAC m7a Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-539-5p agtttTTTCTCaagt GGAGAAAU m6b Created HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-6858-5p agttttTCCTCAagt GUGAGGAG m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-1224-5p agttttTCCTCAagt GUGAGGAC m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-3148 agTTTTTCCtcaagt UGGAAAAA m7b (m7b->m6b) HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-3915 agtttTTCCTCAAgt UUGAGGAA m8a Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-3928-3p agtttTTCCTCaagt GGAGGAAC m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-4496 agttTTTCCTCaagt GAGGAAAC m7a Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-539-5p agtttTTTCTCaagt GGAGAAAU m6b Created HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-6858-5p agttttTCCTCAagt GUGAGGAG m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483

Mutation Mutation ID Sample Name Cancer Type
chr10:g.129877807G>T COSM1504619 TCGA-95-7948-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-302a-5p actgtTTTAAGaatg ACUUAAAC m6b Created HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-6715b-3p actGTTTGAagaatg CUCAAACC m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-676-5p actgtTTGAAGAatg UCUUCAAC m7a Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-302a-5p actgtTTTAAGaatg ACUUAAAC m6b Created HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-6715b-3p actGTTTGAagaatg CUCAAACC m6b Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483
hsa-miR-676-5p actgtTTGAAGAatg UCUUCAAC m7a Disrupted HHHNA_3688_EBF3|NM_001005463|exon_CDS|-4.63548886790299|2.75670256676483

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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