SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005291
Gene Symbol: SREBF1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.17818286G>C COSM4814645 TCGA-D8-A1JD-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4771 aacctaAGTCTGCgc AGCAGACU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-499b-5p aacctAAGTCTGcgc ACAGACUU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-6767-5p aacctaaGTCTGCGc UCGCAGAC m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-4771 aacctaAGTCTGCgc AGCAGACU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-499b-5p aacctAAGTCTGcgc ACAGACUU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-6767-5p aacctaaGTCTGCGc UCGCAGAC m7b Disrupted HPRO6_33922_G40176.1_17721599

Mutation Mutation ID Sample Name Cancer Type
chr17:g.17818282G>A COSM330332 90624 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][plasma_cell_myeloma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4771 taAGTCTGCgcactg AGCAGACU m7b (m7b->m6b) HPRO6_33922_G40176.1_17721599
hsa-miR-499b-5p tAAGTCTGcgcactg ACAGACUU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-6767-5p taaGTCTGCGcactg UCGCAGAC m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-933 taagtcTGCGCACtg UGUGCGCA m7b Disrupted HPRO6_33922_G40176.1_17721599

Mutation Mutation ID Sample Name Cancer Type
chr17:g.17818281C>T COSM1381245 TCGA-FY-A3R9-01 [thyroid][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148a-3p aagtctgTGCACTGc UCAGUGCA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-148b-3p aagtctgTGCACTGc UCAGUGCA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-152-3p aagtctgTGCACTGc UCAGUGCA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-4771 aAGTCTGCgcactgc AGCAGACU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-6767-5p aaGTCTGCGcactgc UCGCAGAC m7b (m7b->m6b) HPRO6_33922_G40176.1_17721599
hsa-miR-933 aagtcTGCGCACtgc UGUGCGCA m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-148a-3p aagtctgTGCACTGc UCAGUGCA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-148b-3p aagtctgTGCACTGc UCAGUGCA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-152-3p aagtctgTGCACTGc UCAGUGCA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-4771 aAGTCTGCgcactgc AGCAGACU m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-6767-5p aaGTCTGCGcactgc UCGCAGAC m7b (m7b->m6b) HPRO6_33922_G40176.1_17721599
hsa-miR-933 aagtcTGCGCACtgc UGUGCGCA m7b Disrupted HPRO6_33922_G40176.1_17721599

Mutation Mutation ID Sample Name Cancer Type
chr17:g.17818277C>T COSM3969859 TCGA-DU-5852-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3120-3p ctgcgcaTTGCTGTc CACAGCAA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-3908 ctgcgCATTGCTgtc GAGCAAUG m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-4519 ctgcgCACTGCTGtc CAGCAGUG m8a Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-933 cTGCGCACtgctgtc UGUGCGCA m7b Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-3120-3p ctgcgcaTTGCTGTc CACAGCAA m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-3908 ctgcgCATTGCTgtc GAGCAAUG m7b Created HPRO6_33922_G40176.1_17721599
hsa-miR-4519 ctgcgCACTGCTGtc CAGCAGUG m8a Disrupted HPRO6_33922_G40176.1_17721599
hsa-miR-933 cTGCGCACtgctgtc UGUGCGCA m7b Disrupted HPRO6_33922_G40176.1_17721599

Mutation Mutation ID Sample Name Cancer Type
chr17:g.17816452G>A COSM4807052 PCSI_0297_Pa_P_526 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1910-5p tgggtAGGACTGagc CCAGUCCU m7b Disrupted HPRO6_33921_G40175.1_17719763
hsa-miR-3168 tgggTAGAACTgagc GAGUUCUA m7b Created HPRO6_33921_G40175.1_17719763
hsa-miR-4264 tgggtagGACTGAGc ACUCAGUC m7b Disrupted HPRO6_33921_G40175.1_17719763
hsa-miR-4277 tgggtAGAACTGagc GCAGUUCU m7b Created HPRO6_33921_G40175.1_17719763
hsa-miR-455-3p tgggtaGGACTGagc GCAGUCCA m6b Disrupted HPRO6_33921_G40175.1_17719763
hsa-miR-6874-3p tgggtAGAACTGagc CAGUUCUG m7a Created HPRO6_33921_G40175.1_17719763
hsa-miR-1910-5p tgggtAGGACTGagc CCAGUCCU m7b Disrupted HPRO6_33921_G40175.1_17719763
hsa-miR-3168 tgggTAGAACTgagc GAGUUCUA m7b Created HPRO6_33921_G40175.1_17719763
hsa-miR-4264 tgggtagGACTGAGc ACUCAGUC m7b Disrupted HPRO6_33921_G40175.1_17719763
hsa-miR-4277 tgggtAGAACTGagc GCAGUUCU m7b Created HPRO6_33921_G40175.1_17719763
hsa-miR-455-3p tgggtaGGACTGagc GCAGUCCA m6b Disrupted HPRO6_33921_G40175.1_17719763
hsa-miR-6874-3p tgggtAGAACTGagc CAGUUCUG m7a Created HPRO6_33921_G40175.1_17719763

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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