SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005291
Gene Symbol: SREBF1
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.17816685C>A COSM4783988 TCGA-D5-6930-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3194-5p gctgtGGCTGGCCct GGCCAGCC m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4640-5p gctgtggCTGGCCCt UGGGCCAG m7b Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4691-3p gctGTGGCTGGccct CCAGCCAC m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4726-5p gctgtggCTGGCCCt AGGGCCAG m7b Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-6508-3p gctgtggATGGCCCt UGGGCCAU m7b Created HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4529-5p gctgtgGATGGCCct AGGCCAUC m7b Created HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-449b-3p gcTGTGGCTGgccct CAGCCACA m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4529-5p gctgtgGATGGCCct AGGCCAUC m7b Created HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4640-5p gctgtggCTGGCCCt UGGGCCAG m7b Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4691-3p gctGTGGCTGGccct CCAGCCAC m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-4726-5p gctgtggCTGGCCCt AGGGCCAG m7b Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-6508-3p gctgtggATGGCCCt UGGGCCAU m7b Created HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-449b-3p gcTGTGGCTGgccct CAGCCACA m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-3194-5p gctgtGGCTGGCCct GGCCAGCC m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398

Mutation Mutation ID Sample Name Cancer Type
chr17:g.17816630G>A COSM4151487 C0062T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-187-5p ctggcTTGTAGCCtc GGCUACAA m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398
hsa-miR-187-5p ctggcTTGTAGCCtc GGCUACAA m8a Disrupted HHHNA_9320_SREBF1|NM_001005291|exon_CDS|-2.85094841671424|-0.555157653557398

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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