SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005271
Gene Symbol: CHD3

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.7884896G>C COSN8314385 TCGA-AO-A128-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5193 gcgacGAGGAGGAgg UCCUCCUC m8a Disrupted HHHNA_9226_CHD3|NM_001005271|exon_CDS|-6.02956879344583|-0.612809445448909
hsa-miR-660-3p gcgacgAGGAGGagg ACCUCCUG m6b Disrupted HHHNA_9226_CHD3|NM_001005271|exon_CDS|-6.02956879344583|-0.612809445448909
hsa-miR-660-3p gcgacgAGGAGGagg ACCUCCUG m6b Disrupted HHHNA_9226_CHD3|NM_001005271|exon_CDS|-6.02956879344583|-0.612809445448909
hsa-miR-5193 gcgacGAGGAGGAgg UCCUCCUC m8a Disrupted HHHNA_9226_CHD3|NM_001005271|exon_CDS|-6.02956879344583|-0.612809445448909

Mutation Mutation ID Sample Name Cancer Type
chr17:g.7884893CGAG>C COSN2531884
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1181 agGGCGACGaggaggagg CCGUCGCC m7b (m7b->m6b) HHHNA_9226_CHD3|NM_001005271|exon_CDS|-6.02956879344583|-0.612809445448909

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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