SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001005242
Gene Symbol: PKP2
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr12:g.32796213C>T COSM468287 TCGA-BP-4981-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4514 cctCTGCCTGTtaca ACAGGCAG m8a Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-2467-3p CCTCTGCTtgttaca AGCAGAGG m8a Created HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-194-5p cctctgcCTGTTACa UGUAACAG m7b Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-1910-3p ccTCTGCCTgttaca GAGGCAGA m7b (m7b->m6b) HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-4692 cctCTGCCTGttaca UCAGGCAG m7b Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-6511a-5p ccTCTGCCTGttaca CAGGCAGA m8a Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473

Mutation Mutation ID Sample Name Cancer Type
chr12:g.32796211G>A COSM3954662 304_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6511a-5p TCTGCCTGttacaca CAGGCAGA m8a Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-1295b-3p tctGCCTATTacaca AAUAGGCC m7a Created HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-194-5p tctgcCTGTTACAca UGUAACAG m8a Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-2054 tctgccTATTACAca CUGUAAUA m7b Created HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-4514 tCTGCCTGTtacaca ACAGGCAG m8a (m8a->m7a) HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473

Mutation Mutation ID Sample Name Cancer Type
chr12:g.32796175A>G COSM1511985 TCGA-55-7910-01 [lung][right_lower_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4774-5p agtTACCAGAatgca UCUGGUAU m7a Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-4664-3p agttACCGGAAtgca CUUCCGGU m7b Created HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473
hsa-miR-4490 agTTACCAGAatgca UCUGGUAA m8a Disrupted HHKTA_20993_NM_004572|2500|2539|3.46143528414057|0.403223783492473

Mutation Mutation ID Sample Name Cancer Type
chr12:g.32792426T>C COSM4714856 T3498 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-622 taaAGACTGaggaaa ACAGUCUG m6b Disrupted HHKTA_21612_NM_004572|2758|2797|3.37489940203705|0.403223783492473
hsa-miR-4264 taaaGACTGAGgaaa ACUCAGUC m7b Disrupted HHKTA_21612_NM_004572|2758|2797|3.37489940203705|0.403223783492473
hsa-miR-670-3p taaagacTGAGGAAa UUUCCUCA m7b Disrupted HHKTA_21612_NM_004572|2758|2797|3.37489940203705|0.403223783492473
hsa-miR-8088 taaagACCGAGGaaa CCUCGGUA m7a Created HHKTA_21612_NM_004572|2758|2797|3.37489940203705|0.403223783492473
hsa-miR-1238-3p taaagacCGAGGAAa CUUCCUCG m7b Created HHKTA_21612_NM_004572|2758|2797|3.37489940203705|0.403223783492473

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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