SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001004354
Gene Symbol: NRARP

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.137301871G>A COSM1314668 TCGA-DK-A1AC-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-516b-5p ctTCCAGAaggctgt AUCUGGAG m6b Created HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-4254 ctTCCAGGaggctgt GCCUGGAG m6b Disrupted HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-3690 ctTCCAGGaggctgt ACCUGGAC m6b Disrupted HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-3614-3p cttccaGAAGGCTgt UAGCCUUC m7b Created HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-875-3p cTTCCAGGaggctgt CCUGGAAA m7a Disrupted HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-6829-3p cttccAGGAGGCtgt UGCCUCCU m7b Disrupted HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-6791-3p cttccAGGAGGCtgt UGCCUCCU m7b Disrupted HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-660-3p cttcCAGGAGGctgt ACCUCCUG m7b Disrupted HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-1237-3p cttcCAGAAGGctgt UCCUUCUG m7b Created HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
hsa-miR-1299 cTTCCAGAAggctgt UUCUGGAA m8a (m7a->m8a) HHHNA_22912_NRARP|NM_001004354|exon_CDS|-4.96667552867713|0.0873728754566889
Mutation Mutation ID Sample Name Cancer Type
chr9:g.137301605G>A COSM753039 TCGA-34-5236-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr9:g.137301585G>A COSM1314667 TCGA-GD-A2C5-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181d-3p ggCCGGTGatgcccg CCACCGGG m6b Disrupted HHHNA_22911_NRARP|NM_001004354|exon_utr3|-4.02128093089953|-0.52395998712185
hsa-miR-7112-3p ggccgGTGATGCccg UGCAUCAC m7b Disrupted HHHNA_22911_NRARP|NM_001004354|exon_utr3|-4.02128093089953|-0.52395998712185

Mutation Mutation ID Sample Name Cancer Type
chr9:g.137300378T>C COSN6382256 RK193_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5583-3p CCATATTCatatttt GAAUAUGG m8a Created HHHNA_22898_NRARP|NM_001004354|exon_utr3|-5.38918253884946|1.54292651885484
hsa-miR-4517 ccatatTCATATTTt AAAUAUGA m8a Created HHHNA_22898_NRARP|NM_001004354|exon_utr3|-5.38918253884946|1.54292651885484

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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