SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003800
Gene Symbol: BICD2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718752C>T COSM3659567 TCGA-D3-A2JO-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3908 acctgATTGCTatca GAGCAAUG m6b Created HPTA3_18962_G30699.1_95481036
hsa-miR-3942-5p acctgATTGCTatca AAGCAAUA m6b Created HPTA3_18962_G30699.1_95481036
hsa-miR-4766-3p acctgATTGCTATca AUAGCAAU m8a Created HPTA3_18962_G30699.1_95481036
hsa-miR-4772-5p aCCTGATCgctatca UGAUCAGG m7b Disrupted HPTA3_18962_G30699.1_95481036
hsa-miR-4772-5p aCCTGATCgctatca UGAUCAGG m7b Disrupted HPTA3_18962_G30699.1_95481036
hsa-miR-4766-3p acctgATTGCTATca AUAGCAAU m8a Created HPTA3_18962_G30699.1_95481036
hsa-miR-3942-5p acctgATTGCTatca AAGCAAUA m6b Created HPTA3_18962_G30699.1_95481036
hsa-miR-3908 acctgATTGCTatca GAGCAAUG m6b Created HPTA3_18962_G30699.1_95481036

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718742C>T COSM3413818 TCGA-EE-A29H-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1245b-3p taTCATCTGtgacca UCAGAUGA m7b (m6b->m7b) HPTA3_18962_G30699.1_95481036
hsa-miR-5683 tatCATCTGTgacca UACAGAUG m7b Created HPTA3_18962_G30699.1_95481036
hsa-miR-5683 tatCATCTGTgacca UACAGAUG m7b Created HPTA3_18962_G30699.1_95481036
hsa-miR-1245b-3p taTCATCTGtgacca UCAGAUGA m7b (m6b->m7b) HPTA3_18962_G30699.1_95481036

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718741G>A COSM1111161 TCGA-AP-A0LE-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5587-5p atcatccGTGACCAg AUGGUCAC m7b Disrupted HPTA3_18962_G30699.1_95481036
hsa-miR-490-5p atcATCCATGaccag CCAUGGAU m7b Created HPTA3_18962_G30699.1_95481036
hsa-miR-490-5p atcATCCATGaccag CCAUGGAU m7b Created HPTA3_18962_G30699.1_95481036
hsa-miR-5587-5p atcatccGTGACCAg AUGGUCAC m7b Disrupted HPTA3_18962_G30699.1_95481036

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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