SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003800
Gene Symbol: BICD2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718752C>T COSM4906201 TCGA-D3-A2JO-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3908 acctgATTGCTatca GAGCAAUG m6b Created HPRO6_77873_G93405.1_95481036
hsa-miR-3942-5p acctgATTGCTatca AAGCAAUA m6b Created HPRO6_77873_G93405.1_95481036
hsa-miR-4766-3p acctgATTGCTATca AUAGCAAU m8a Created HPRO6_77873_G93405.1_95481036
hsa-miR-4772-5p aCCTGATCgctatca UGAUCAGG m7b Disrupted HPRO6_77873_G93405.1_95481036
hsa-miR-3908 acctgATTGCTatca GAGCAAUG m6b Created HPRO6_77873_G93405.1_95481036
hsa-miR-3942-5p acctgATTGCTatca AAGCAAUA m6b Created HPRO6_77873_G93405.1_95481036
hsa-miR-4766-3p acctgATTGCTATca AUAGCAAU m8a Created HPRO6_77873_G93405.1_95481036
hsa-miR-4772-5p aCCTGATCgctatca UGAUCAGG m7b Disrupted HPRO6_77873_G93405.1_95481036

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718742C>T COSM4781780 TCGA-EE-A29H-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1245b-3p taTCATCTGtgacca UCAGAUGA m7b (m6b->m7b) HPRO6_77873_G93405.1_95481036
hsa-miR-5683 tatCATCTGTgacca UACAGAUG m7b Created HPRO6_77873_G93405.1_95481036
hsa-miR-1245b-3p taTCATCTGtgacca UCAGAUGA m7b (m6b->m7b) HPRO6_77873_G93405.1_95481036
hsa-miR-5683 tatCATCTGTgacca UACAGAUG m7b Created HPRO6_77873_G93405.1_95481036

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718741G>A COSM1111161 TCGA-AP-A0LE-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-490-5p atcATCCATGaccag CCAUGGAU m7b Created HPRO6_77873_G93405.1_95481036
hsa-miR-5587-5p atcatccGTGACCAg AUGGUCAC m7b Disrupted HPRO6_77873_G93405.1_95481036
hsa-miR-490-5p atcATCCATGaccag CCAUGGAU m7b Created HPRO6_77873_G93405.1_95481036
hsa-miR-5587-5p atcatccGTGACCAg AUGGUCAC m7b Disrupted HPRO6_77873_G93405.1_95481036

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92713299C>G COSN5708177 RK050_C [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2110 gcaTTCCCCAggttt UUGGGGAA m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-4271 gcaTTCCCCaggttt GGGGGAAG m6b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-4667-5p gcatTCCCCAGgttt ACUGGGGA m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-4700-5p gcatTCCCCAGgttt UCUGGGGA m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-490-3p gcattccCCAGGTTt CAACCUGG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-6716-5p gCATTCCCcaggttt UGGGAAUG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-6850-5p gcaTTCCGCAggttt GUGCGGAA m7b Created HPRO6_77872_G93404.1_95475580
hsa-miR-6852-5p gcattCCCCAGGttt CCCUGGGG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-7851-3p gcattcCCCAGGTtt UACCUGGG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-8089 gcatTCCCCAGGttt CCUGGGGA m8a Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-2110 gcaTTCCCCAggttt UUGGGGAA m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-4271 gcaTTCCCCaggttt GGGGGAAG m6b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-4667-5p gcatTCCCCAGgttt ACUGGGGA m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-4700-5p gcatTCCCCAGgttt UCUGGGGA m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-490-3p gcattccCCAGGTTt CAACCUGG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-6716-5p gCATTCCCcaggttt UGGGAAUG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-6850-5p gcaTTCCGCAggttt GUGCGGAA m7b Created HPRO6_77872_G93404.1_95475580
hsa-miR-6852-5p gcattCCCCAGGttt CCCUGGGG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-7851-3p gcattcCCCAGGTtt UACCUGGG m7b Disrupted HPRO6_77872_G93404.1_95475580
hsa-miR-8089 gcatTCCCCAGGttt CCUGGGGA m8a Disrupted HPRO6_77872_G93404.1_95475580

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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