SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003800
Gene Symbol: BICD2

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718834A>G COSM4149558 AOCS-079-1-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1913 acggGGGGCAGcagc UCUGCCCC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-324-3p acggGGGGCAGcagc ACUGCCCC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4313 acgGGGGGCagcagc AGCCCCCU m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-626 acggggGACAGCagc AGCUGUCU m6b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-6876-3p acggggGACAGCagc AGCUGUCU m6b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-1913 acggGGGGCAGcagc UCUGCCCC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-324-3p acggGGGGCAGcagc ACUGCCCC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4313 acgGGGGGCagcagc AGCCCCCU m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-626 acggggGACAGCagc AGCUGUCU m6b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-6876-3p acggggGACAGCagc AGCUGUCU m6b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718784C>T COSM4759007 pfg212T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3622b-5p tgacCCATGCCggga AGGCAUGG m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4304 tgaccCATGCCGGga CCGGCAUG m8a Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-6853-5p tgaCCCACGCcggga AGCGUGGG m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3622b-5p tgacCCATGCCggga AGGCAUGG m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4304 tgaccCATGCCGGga CCGGCAUG m8a Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-6853-5p tgaCCCACGCcggga AGCGUGGG m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718752C>T COSM4906201 TCGA-D3-A2JO-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3908 acctgATTGCTatca GAGCAAUG m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3942-5p acctgATTGCTatca AAGCAAUA m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4766-3p acctgATTGCTATca AUAGCAAU m8a Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4772-5p aCCTGATCgctatca UGAUCAGG m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3908 acctgATTGCTatca GAGCAAUG m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3942-5p acctgATTGCTatca AAGCAAUA m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4766-3p acctgATTGCTATca AUAGCAAU m8a Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4772-5p aCCTGATCgctatca UGAUCAGG m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718742C>T COSM4781780 TCGA-EE-A29H-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1245b-3p taTCATCTGtgacca UCAGAUGA m7b (m6b->m7b) HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-5683 tatCATCTGTgacca UACAGAUG m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-1245b-3p taTCATCTGtgacca UCAGAUGA m7b (m6b->m7b) HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-5683 tatCATCTGTgacca UACAGAUG m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718741G>A COSM1111161 TCGA-AP-A0LE-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-490-5p atcATCCATGaccag CCAUGGAU m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-5587-5p atcatccGTGACCAg AUGGUCAC m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-490-5p atcATCCATGaccag CCAUGGAU m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-5587-5p atcatccGTGACCAg AUGGUCAC m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259

Mutation Mutation ID Sample Name Cancer Type
chr9:g.92718738A>G COSM4164092 PTC-7C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3126-3p atccgtgGCCAGATc CAUCUGGC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3176 atccgtGGCCAGatc ACUGGCCU m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3190-5p atccgTGGCCAGAtc UCUGGCCA m8a Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3663-5p atccgtGACCAGatc GCUGGUCU m6b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4701-5p atccGTGGCCAgatc UUGGCCAC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-5587-5p atccGTGACCAgatc AUGGUCAC m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-588 atccGTGGCCAgatc UUGGCCAC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3126-3p atccgtgGCCAGATc CAUCUGGC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3176 atccgtGGCCAGatc ACUGGCCU m6b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3190-5p atccgTGGCCAGAtc UCUGGCCA m8a Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-3663-5p atccgtGACCAGatc GCUGGUCU m6b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-4701-5p atccGTGGCCAgatc UUGGCCAC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-5587-5p atccGTGACCAgatc AUGGUCAC m7b Disrupted HHRBL_14903_BCBL1-2of3-SCL_4259
hsa-miR-588 atccGTGGCCAgatc UUGGCCAC m7b Created HHRBL_14903_BCBL1-2of3-SCL_4259

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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