SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003694
Gene Symbol: BRPF1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.9739871G>A COSM1049130 TCGA-B5-A11Y-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-640 aagtcccGGATCAaa AUGAUCCA m6b Disrupted HPRT3_16947_G22508.1_9781547
hsa-miR-4454 aagtccCGGATCaaa GGAUCCGA m6b Disrupted HPRT3_16947_G22508.1_9781547
hsa-miR-4497 aagTCCCGGAtcaaa CUCCGGGA m7b Disrupted HPRT3_16947_G22508.1_9781547
hsa-miR-4646-5p aagTCCCAGatcaaa ACUGGGAA m6b Created HPRT3_16947_G22508.1_9781547
hsa-miR-619-5p aagTCCCAGatcaaa GCUGGGAU m6b Created HPRT3_16947_G22508.1_9781547
hsa-miR-4314 aagTCCCAGAtcaaa CUCUGGGA m7b Created HPRT3_16947_G22508.1_9781547
hsa-miR-6506-5p aagTCCCAGatcaaa ACUGGGAU m6b Created HPRT3_16947_G22508.1_9781547
hsa-miR-7641 aagtcccAGATCAAa UUGAUCUC m7a Created HPRT3_16947_G22508.1_9781547
hsa-miR-1298-3p aagtCCCAGATcaaa CAUCUGGG m7b Created HPRT3_16947_G22508.1_9781547
hsa-miR-204-3p aagTCCCAGatcaaa GCUGGGAA m6b Created HPRT3_16947_G22508.1_9781547
hsa-miR-4298 aaGTCCCAGatcaaa CUGGGACA m7a (m6a->m7a) HPRT3_16947_G22508.1_9781547

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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