SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001003694
Gene Symbol: BRPF1

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.9739061A>G COSM3916780 TCGA-EE-A3J3-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4540 gaggAGGACTAcatc UUAGUCCU m7b Disrupted HPCB1_26286_G33386.1_9780753
hsa-miR-7852-3p gaggaggACTACATc UAUGUAGU m7b Disrupted HPCB1_26286_G33386.1_9780753
hsa-miR-6838-3p gaggAGGACTacatc AAGUCCUG m6b Disrupted HPCB1_26286_G33386.1_9780753
hsa-miR-6779-3p gaggAGGGCTacatc AAGCCCUG m6b Created HPCB1_26286_G33386.1_9780753
hsa-miR-5193 GAGGAGGActacatc UCCUCCUC m8a Disrupted HPCB1_26286_G33386.1_9780753
hsa-miR-4687-5p gagGAGGGCTacatc CAGCCCUC m7b Created HPCB1_26286_G33386.1_9780753
hsa-miR-4667-3p gAGGAGGGctacatc UCCCUCCU m7b Created HPCB1_26286_G33386.1_9780753
hsa-miR-4290 gaGGAGGGCtacatc UGCCCUCC m7b (m6b->m7b) HPCB1_26286_G33386.1_9780753
hsa-miR-129-2-3p gaggAGGGCTacatc AAGCCCUU m6b Created HPCB1_26286_G33386.1_9780753
hsa-miR-129-1-3p gaggAGGGCTacatc AAGCCCUU m6b Created HPCB1_26286_G33386.1_9780753

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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