SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401269A>G COSM1741265 064 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-194-3p taataCCACTGGact CCAGUGGG m7a Disrupted HPTA3_8472_G13305.1_42478640
hsa-miR-199a-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPTA3_8472_G13305.1_42478640
hsa-miR-199b-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPTA3_8472_G13305.1_42478640
hsa-miR-4738-5p taatacCGCTGGact ACCAGCGC m6b Created HPTA3_8472_G13305.1_42478640

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398664C>A COSM979964 TCGA-B5-A11N-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cccCCATCTCttggc GGAGAUGG m7b Disrupted HPTA3_8471_G13304.1_42476026

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398237C>A COSM51912 PD2144a [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2110 atTTCCCCAgttatg UUGGGGAA m7b (m7b->m6b) HPTA3_8470_G13303.1_42475600
hsa-miR-3153 aTTTCCCCagttatg GGGGAAAG m7a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-4271 atTTCCCCagttatg GGGGGAAG m6b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-450a-1-3p atTTCCCAAgttatg AUUGGGAA m7b (m6b->m7b) HPTA3_8470_G13303.1_42475600
hsa-miR-4667-5p attTCCCCAGTtatg ACUGGGGA m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-4700-5p attTCCCCAGttatg UCUGGGGA m7b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-6733-5p aTTTCCCAagttatg UGGGAAAG m7a Created HPTA3_8470_G13303.1_42475600
hsa-miR-6739-5p aTTTCCCAagttatg UGGGAAAG m7a Created HPTA3_8470_G13303.1_42475600
hsa-miR-8089 attTCCCCAGttatg CCUGGGGA m7b Disrupted HPTA3_8470_G13303.1_42475600

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398223C>T COSM3518078 TCGA-EE-A3J5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p gcaCCTCCCAGtggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-149-3p gcaCCTCCCagtggg AGGGAGGG m6b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-181a-2-3p gcacctcTCAGTGGg ACCACUGA m7b Created HPTA3_8470_G13303.1_42475600
hsa-miR-30b-3p gcaCCTCCCAGtggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3192-5p gcacCTCCCAGtggg UCUGGGAG m7b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689a-3p gcaCCTCCCAGtggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689b-3p gcaCCTCCCAGtggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689c gcaCCTCCCAGtggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689d gCACCTCCCagtggg GGGAGGUG m8a (m8a->m7a) HPTA3_8470_G13303.1_42475600
hsa-miR-6761-5p gcacCTCTCAGtggg UCUGAGAG m7b Created HPTA3_8470_G13303.1_42475600
hsa-miR-6779-5p gcaCCTCCCAGtggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-6780a-5p gcaCCTCCCAgtggg UUGGGAGG m7b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-6799-5p gcACCTCCCagtggg GGGGAGGU m7b (m7b->m6b) HPTA3_8470_G13303.1_42475600
hsa-miR-6851-5p gCACCTCCcagtggg AGGAGGUG m7b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-6883-5p gcaCCTCCCagtggg AGGGAGGG m6b Disrupted HPTA3_8470_G13303.1_42475600

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398222C>A COSM4902709 TCGA-GF-A6C9-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273h-5p caCCTCCCAGtgggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-149-3p caCCTCCCagtgggg AGGGAGGG m6b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-30b-3p caCCTCCCAGtgggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3192-5p cacCTCCCAGtgggg UCUGGGAG m7b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3614-5p cacctCCAAGTGGgg CCACUUGG m8a Created HPTA3_8470_G13303.1_42475600
hsa-miR-3689a-3p caCCTCCCAGtgggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689b-3p caCCTCCCAGtgggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689c caCCTCCCAGtgggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-3689d CACCTCCCagtgggg GGGAGGUG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-432-5p cacCTCCAAGtgggg UCUUGGAG m7b Created HPTA3_8470_G13303.1_42475600
hsa-miR-6779-5p caCCTCCCAGtgggg CUGGGAGG m8a Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-6780a-5p caCCTCCCAgtgggg UUGGGAGG m7b (m7b->m6b) HPTA3_8470_G13303.1_42475600
hsa-miR-6799-5p cACCTCCCagtgggg GGGGAGGU m7b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-6883-5p caCCTCCCagtgggg AGGGAGGG m6b Disrupted HPTA3_8470_G13303.1_42475600
hsa-miR-890 caccTCCAAGTgggg UACUUGGA m7b Created HPTA3_8470_G13303.1_42475600

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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