SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44401269A>G COSM1741265 064 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-194-3p taataCCACTGGact CCAGUGGG m7a Disrupted HPRO6_34696_G41045.1_42478638
hsa-miR-199a-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPRO6_34696_G41045.1_42478638
hsa-miR-199b-5p taatacCACTGGact CCCAGUGU m6b Disrupted HPRO6_34696_G41045.1_42478638
hsa-miR-4738-5p taatacCGCTGGact ACCAGCGC m6b Created HPRO6_34696_G41045.1_42478638

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44399482C>T COSM3191170 TCGA-GN-A26A-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3928-3p atcGTTCCTCCcggc GGAGGAAC m8a Disrupted HPRO6_34695_G41043.1_42476833
hsa-miR-7106-5p atcgtTCCTCCCggc UGGGAGGA m7b Disrupted HPRO6_34695_G41043.1_42476833
hsa-miR-766-5p atcgTTCCTCCcggc AGGAGGAA m7b Disrupted HPRO6_34695_G41043.1_42476833

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44399481T>A COSM3795672 TCGA-FD-A3SJ-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-363-5p tcgtTCCACCCGgcg CGGGUGGA m8a Created HPRO6_34695_G41043.1_42476833
hsa-miR-3928-3p tcGTTCCTCCcggcg GGAGGAAC m8a Disrupted HPRO6_34695_G41043.1_42476833
hsa-miR-6745 tcgtTCCACCCggcg UGGGUGGA m7b Created HPRO6_34695_G41043.1_42476833
hsa-miR-7106-5p tcgtTCCTCCCggcg UGGGAGGA m7b Disrupted HPRO6_34695_G41043.1_42476833
hsa-miR-766-5p tcgTTCCTCCcggcg AGGAGGAA m7b Disrupted HPRO6_34695_G41043.1_42476833

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44399477G>T COSM1521421 TCGA-44-7672-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1321 tCCTCCCTGcgttct CAGGGAGG m8a (m7a->m8a) HPRO6_34695_G41043.1_42476833
hsa-miR-4270 tcCTCCCTGcgttct UCAGGGAG m7b (m6b->m7b) HPRO6_34695_G41043.1_42476833
hsa-miR-4441 tcCTCCCTGcgttct ACAGGGAG m7b (m6b->m7b) HPRO6_34695_G41043.1_42476833
hsa-miR-4739 tCCTCCCTgcgttct AAGGGAGG m7b Created HPRO6_34695_G41043.1_42476833
hsa-miR-4756-5p tCCTCCCTGcgttct CAGGGAGG m8a (m7a->m8a) HPRO6_34695_G41043.1_42476833
hsa-miR-6754-5p tcCTCCCTGcgttct CCAGGGAG m7b (m6b->m7b) HPRO6_34695_G41043.1_42476833

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44399475C>T COSM3191168 TCGA-HU-A4GQ-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181d-3p ctCCCGGTGttctta CCACCGGG m7b (m6b->m7b) HPRO6_34695_G41043.1_42476833

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44399465C>T COSM4188298 BK0058 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6869-5p tctTACTCAagtagc GUGAGUAG m6b Disrupted HPRO6_34695_G41043.1_42476833

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398664C>A COSM979964 TCGA-B5-A11N-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cccCCATCTCttggc GGAGAUGG m7b Disrupted HPRO6_34694_G41042.1_42476028

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398502A>C COSM1208519 587224 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1292-5p gggcatcCGTTCCCt UGGGAACG m7b Created HPRO6_34693_G41041.1_42475877
hsa-miR-4471 gggcatcAGTTCCCt UGGGAACU m7b Disrupted HPRO6_34693_G41041.1_42475877
hsa-miR-8059 gggcatcAGTTCCCt GGGGAACU m7b Disrupted HPRO6_34693_G41041.1_42475877

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398345C>T COSM3518079 TCGA-EE-A2MD-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7b-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7c-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7d-5p aCTACCTCcccgacc AGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7e-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7f-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7g-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-let-7i-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-3175 actacCTCCCCGacc CGGGGAGA m7a Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-425-3p actaccTTCCCGAcc AUCGGGAA m7b Created HPRO6_34692_G41040.1_42475722
hsa-miR-4458 aCTACCTCcccgacc AGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-4500 aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-4747-5p actaCCTTCCCgacc AGGGAAGG m7b Created HPRO6_34692_G41040.1_42475722
hsa-miR-5196-5p actaCCTTCCCgacc AGGGAAGG m7b Created HPRO6_34692_G41040.1_42475722
hsa-miR-6777-5p actacCTCCCCGacc ACGGGGAG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-6799-5p actACCTCCCCgacc GGGGAGGU m8a Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-6825-5p actaCCTCCCCgacc UGGGGAGG m7b Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-6889-5p actacCTCCCCGAcc UCGGGGAG m8a Disrupted HPRO6_34692_G41040.1_42475722
hsa-miR-98-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPRO6_34692_G41040.1_42475722

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44397978G>A COSM4915744 TCGA-DD-A1EF-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3137 aGCTACAGcctctgc UCUGUAGC m7b Disrupted HPRO6_34691_G41038.1_42475340
hsa-miR-377-5p agctaCAACCTCTgc AGAGGUUG m8a Created HPRO6_34691_G41038.1_42475340
hsa-miR-4257 agctacaACCTCTGc CCAGAGGU m7b Created HPRO6_34691_G41038.1_42475340
hsa-miR-485-5p agctaCAGCCTCTgc AGAGGCUG m8a Disrupted HPRO6_34691_G41038.1_42475340
hsa-miR-6086 agctaCAACCTCtgc GGAGGUUG m7b Created HPRO6_34691_G41038.1_42475340
hsa-miR-6884-5p agctaCAGCCTCTgc AGAGGCUG m8a Disrupted HPRO6_34691_G41038.1_42475340

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44396786G>T COSN8603220 J63_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-337-3p ttTATAGGAtttttt CUCCUAUA m7b (m7b->m6b) HPRO6_34688_G41034.1_42474135
hsa-miR-4668-3p tttataGGATTTTtt GAAAAUCC m7b Disrupted HPRO6_34688_G41034.1_42474135
hsa-miR-548c-3p tttatagGATTTTTt CAAAAAUC m7b Disrupted HPRO6_34688_G41034.1_42474135
hsa-miR-625-3p ttTATAGTatttttt GACUAUAG m6b Created HPRO6_34688_G41034.1_42474135
hsa-miR-8084 tttaTAGTATTtttt GAAUACUA m7b Created HPRO6_34688_G41034.1_42474135

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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