SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398664C>A COSM979964 TCGA-B5-A11N-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cccCCATCTCttggc GGAGAUGG m7b Disrupted HPKTA_27593_G29648.1_42476027

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398370GA>A COSM4615591 SNU-C4 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2355-5p ccCTGGGGAcccaacc AUCCCCAG m7b (m7b->m6b) HPKTA_27592_G29647.1_42475722
hsa-miR-4281 ccctgGGGACCCaacc GGGUCCCG m7a Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-6764-5p CCCTGGGAcccaacc UCCCAGGG m8a Created HPKTA_27592_G29647.1_42475722
hsa-miR-7977 ccCTGGGAcccaacc UUCCCAGC m6b Created HPKTA_27592_G29647.1_42475722

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44398345C>T COSM3518079 TCGA-EE-A2MD-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7b-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7c-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7d-5p aCTACCTCcccgacc AGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7e-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7f-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7g-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-let-7i-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-3175 actacCTCCCCGacc CGGGGAGA m7a Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-425-3p actaccTTCCCGAcc AUCGGGAA m7b Created HPKTA_27592_G29647.1_42475722
hsa-miR-4458 aCTACCTCcccgacc AGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-4500 aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-4747-5p actaCCTTCCCgacc AGGGAAGG m7b Created HPKTA_27592_G29647.1_42475722
hsa-miR-5196-5p actaCCTTCCCgacc AGGGAAGG m7b Created HPKTA_27592_G29647.1_42475722
hsa-miR-6777-5p actacCTCCCCGacc ACGGGGAG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-6799-5p actACCTCCCCgacc GGGGAGGU m8a Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-6825-5p actaCCTCCCCgacc UGGGGAGG m7b Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-6889-5p actacCTCCCCGAcc UCGGGGAG m8a Disrupted HPKTA_27592_G29647.1_42475722
hsa-miR-98-5p aCTACCTCcccgacc UGAGGUAG m7b Disrupted HPKTA_27592_G29647.1_42475722

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44397936C>T COSM4972845 1N05-VS-1T05 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-135b-3p catCCTACAacatca AUGUAGGG m6b Disrupted HPKTA_27591_G29646.1_42475296
hsa-miR-8065 caTCCTACAacatca UGUAGGAA m7a (m7a->m6a) HPKTA_27591_G29646.1_42475296

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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