SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44396786G>T COSN8603220 J63_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-337-3p ttTATAGGAtttttt CUCCUAUA m7b (m7b->m6b) HHSJI_1222_Peak1160|7|0.0939|3|NM_001002909|GPATCH8
hsa-miR-4668-3p tttataGGATTTTtt GAAAAUCC m7b Disrupted HHSJI_1222_Peak1160|7|0.0939|3|NM_001002909|GPATCH8
hsa-miR-548c-3p tttatagGATTTTTt CAAAAAUC m7b Disrupted HHSJI_1222_Peak1160|7|0.0939|3|NM_001002909|GPATCH8
hsa-miR-625-3p ttTATAGTatttttt GACUAUAG m6b Created HHSJI_1222_Peak1160|7|0.0939|3|NM_001002909|GPATCH8
hsa-miR-8084 tttaTAGTATTtttt GAAUACUA m7b Created HHSJI_1222_Peak1160|7|0.0939|3|NM_001002909|GPATCH8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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