SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001002909
Gene Symbol: GPATCH8

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.44406000T>C COSM4066935 TCGA-BR-4280-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193a-5p ttcAAGACCCcgcaa UGGGUCUU m7b Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-4706 ttcaagaCCCCGCaa AGCGGGGA m6b Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-4749-5p ttcaagaCCCCGCAa UGCGGGGA m7a Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-744-5p ttcaagaCCCCGCAa UGCGGGGC m7a Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44405997C>T COSM979979 TCGA-D1-A167-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4722-5p aagaTCCTGCaagga GGCAGGAG m6b Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-1286 aagaTCCTGCAagga UGCAGGAC m7a Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-6841-3p aagatccTGCAAGGa ACCUUGCA m7b Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-6511b-5p aagatCCTGCAagga CUGCAGGC m6b Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914
hsa-miR-6811-5p aagatCCTGCAagga AUGCAGGC m6b Created HHHNE_7310_GPATCH8|NM_001002909|exon_CDS|-6.63821724669389|0.535109628057914

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44397830T>G COSM979961 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6803-5p ACCCCCAGttctttg CUGGGGGU m8a Created HHHNE_7308_GPATCH8|NM_001002909|exon_CDS|-6.37344054974029|2.24272840141161
hsa-miR-3133 acccccaGTTCTTTg UAAAGAAC m7b Created HHHNE_7308_GPATCH8|NM_001002909|exon_CDS|-6.37344054974029|2.24272840141161
hsa-miR-4511 acccccAGTTCTTtg GAAGAACU m7b Created HHHNE_7308_GPATCH8|NM_001002909|exon_CDS|-6.37344054974029|2.24272840141161
hsa-miR-637 aCCCCCAGTtctttg ACUGGGGG m8a (m7a->m8a) HHHNE_7308_GPATCH8|NM_001002909|exon_CDS|-6.37344054974029|2.24272840141161
hsa-miR-5680 accccCATTTCTttg GAGAAAUG m7b Disrupted HHHNE_7308_GPATCH8|NM_001002909|exon_CDS|-6.37344054974029|2.24272840141161

Mutation Mutation ID Sample Name Cancer Type
chr17:g.44397827C>A COSM1208523 587376 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5680 ccCATTTCTttgtcc GAGAAAUG m7b (m7b->m6b) HHHNE_7308_GPATCH8|NM_001002909|exon_CDS|-6.37344054974029|2.24272840141161

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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